Non-Coding RNA Search

Ss1.1-Pig4-TMW8049D20.3

Sequence:


               
               GCGGGTGATGCTGCTGCGGAGCGTAGCTGGGGGATGCTGGGTGGCTGCCGCTGCCCGCAG
CCGGGTGCTACTCTCCAGCTGGGACCGGTGCCAAAGGCTTCCTGGAGACAGCAGCATTCT
TCACAGGACCCGAGGCTTTGGAGGCCACCGAGGGTTCGGAAAGGACCACGAGGAGGTGGA
AACCCGAGCAGGTGCAACGGACCCCGGGCAGCCCAAGTCCTCCCTGCCCGGTGGGCGCCC
CTCAGAATCCCCGTACCCACCACCACCTGAGCTCCAGCCACCCACAAACTGCTGCATGAG
CGGCTGCCCCAACTGCGTGTGGGTGGAGTACGCAGATGCGCTGCTGCGGCACTACCAGGA
CGGGGGGCAGCGGGCCCTGGCCGCCCTGGAGGAGCACGTGGCTGACGAGACCCTCAAGGC
CTTCCTCAGGGTGGAGATCCAGCTCCGCCTGAAGAGTGGAGGCTGAGCCACCTGCCGGCC
GCGCACGCCTAAAACAAGCACCTCGGATGCGGCTCAGCCTTTGCCCCACGGCCCGTGTGT
GGCGGCGGCGACGGGAATAGGACGAGCCGCTCCTTGTCTTTGCCTGAGAATAACACGTTC
CCTGCAGTGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGTGATGCTGCTGCGGAGCGTAGCTGGGGGATGCTGGGTGGCTGCCGCTGCCCGCAG
CCGGGTGCTACTCTCCAGCTGGGACCGGTGCCAAAGGCTTCCTGGAGACAGCAGCATTCT
TCACAGGACCCGAGGCTTTGGAGGCCACCGAGGGTTCGGAAAGGACCACGAGGAGGTGGA
AACCCGAGCAGGTGCAACGGACCCCGGGCAGCCCAAGTCCTCCCTGCCCGGTGGGCGCCC
CTCAGAATCCCCGTACCCACCACCACCTGAGCTCCAGCCACCCACAAACTGCTGCATGAG
CGGCTGCCCCAACTGCGTGTGGGTGGAGTACGCAGATGCGCTGCTGCGGCACTACCAGGA
CGGGGGGCAGCGGGCCCTGGCCGCCCTGGAGGAGCACGTGGCTGACGAGACCCTCAAGGC
CTTCCTCAGGGTGGAGATCCAGCTCCGCCTGAAGAGTGGAGGCTGAGCCACCTGCCGGCC
GCGCACGCCTAAAACAAGCACCTCGGATGCGGCTCAGCCTTTGCCCCACGGCCCGTGTGT
GGCGGCGGCGACGGGAATAGGACGAGCCGCTCCTTGTCTTTGCCTGAGAATAACACGTTC
CCTGCAGTGGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R7Q6_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R7Q6_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               167-286, - strand, RNAz p=0.653995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-286, - strand, RNAz p=0.653995

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               64-611, gnl|bosTau2|chr19 (45259573-45259016)
               

               
               64-611, gnl|Hg17|chr17 (77243020-77242480)
               

               
               64-611, gnl|Mm7|chr11 (120566208-120565650)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-611, gnl|bosTau2|chr19 (45259573-45259016)
               

               
               64-611, gnl|Hg17|chr17 (77243020-77242480)
               

               
               64-611, gnl|Mm7|chr11 (120566208-120565650)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fhi (0.339155)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ute (0.132784)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ute (0.132784)

	64-611, gnl\|bosTau2\|chr19 (45259573-45259016)
	64-611, gnl\|Hg17\|chr17 (77243020-77242480)
	64-611, gnl\|Mm7\|chr11 (120566208-120565650)

	fhi (0.339155)
	cov (0.264306)
	nms (0.213858)
	mas (0.210305)
	col (0.195008)
	nlu (0.191681)
	ute (0.132784)