Non-Coding RNA Search

Ss1.1-Pig4-TMW8049E15.3

Sequence:


               
               TAGAATCGAAGAAATCAGATTAAGCACTGTGTAGGCTTTTAAAAATTACCACTGTGAGAA
TAAAGTTCTAATAACTTATTTAGACTGATTTAAAAAGTACAGAAAGATTTTGAGTAAATT
TAGTTCCTGGCAAGCTCTTAACTTTATTTTTGTAAAGATTATGTCAGTTAATAGTTAAAT
GGTTAATCATGGCCTGTAATCTTTTAATGTATTACAGTGATACCTTTACAGGAAAACAAA
AAGTTTAAAACTTGACATGTAATTCTAACATCATTTTAGGAAATTTTTAATTTTTTTCCA
TTGCACTTGCCTCTTAAGCATGTCTTTGGGTAAATCCCGCAAGTAATTCTAACATTGTTG
TTTGATTTCCAGCTTTTGAAATGTTGTGCAGCGCCCTGTCTGCTCACTGATCATGGTCAG
GGTGATTTTCCCAGCTCAAGCTGCACGTTCACTCTTAACATTTATAAGGCACAGAATAGG
TAGGAATGTTTTTATTATGTAAACATGACTTACAAAATTATGTACAATGGATGGATTAAA
GGTATTTAATATTTGTAATTCATACTAACTGTAGAAATGGCCCTAAAGCATGCTGCGTAA
TTAATTTATATCTCCATTATTGTAAACGTTTCATGATCTTGCATTTGACTTTATCAAATT
CATCACCATTTCATAGCAACAGTATAGTCTTTTCTCTTTTTCCTCTCTAACTTCCCTAAA
ATCATCTCCTATCTAATAGGGATAGAAACTGTCACTAGAAGAGAATCAGGAGTTCCCGTT
GTGGTTCAGTGGTTAACGAATCTGACTAGAATCCATAAGGACGCAGGTTCGATCCCTTAC
CTCACTTAGTGGGTTAAGGATCCAGCATTGCCATGAGCTGTGGTGTAGGTTGCAGATGCG
GCTCGGATCCCGCATTGCTGTGGCTGTAGCGTAGGCTGGCAGCTACAGCTCTGATTCAAC
CCCTAGCCTAGGAACTTCTGTATGTCGCGGGAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAATCGAAGAAATCAGATTAAGCACTGTGTAGGCTTTTAAAAATTACCACTGTGAGAA
TAAAGTTCTAATAACTTATTTAGACTGATTTAAAAAGTACAGAAAGATTTTGAGTAAATT
TAGTTCCTGGCAAGCTCTTAACTTTATTTTTGTAAAGATTATGTCAGTTAATAGTTAAAT
GGTTAATCATGGCCTGTAATCTTTTAATGTATTACAGTGATACCTTTACAGGAAAACAAA
AAGTTTAAAACTTGACATGTAATTCTAACATCATTTTAGGAAATTTTTAATTTTTTTCCA
TTGCACTTGCCTCTTAAGCATGTCTTTGGGTAAATCCCGCAAGTAATTCTAACATTGTTG
TTTGATTTCCAGCTTTTGAAATGTTGTGCAGCGCCCTGTCTGCTCACTGATCATGGTCAG
GGTGATTTTCCCAGCTCAAGCTGCACGTTCACTCTTAACATTTATAAGGCACAGAATAGG
TAGGAATGTTTTTATTATGTAAACATGACTTACAAAATTATGTACAATGGATGGATTAAA
GGTATTTAATATTTGTAATTCATACTAACTGTAGAAATGGCCCTAAAGCATGCTGCGTAA
TTAATTTATATCTCCATTATTGTAAACGTTTCATGATCTTGCATTTGACTTTATCAAATT
CATCACCATTTCATAGCAACAGTATAGTCTTTTCTCTTTTTCCTCTCTAACTTCCCTAAA
ATCATCTCCTATCTAATAGGGATAGAAACTGTCACTAGAAGAGAATCAGGAGTTCCCGTT
GTGGTTCAGTGGTTAACGAATCTGACTAGAATCCATAAGGACGCAGGTTCGATCCCTTAC
CTCACTTAGTGGGTTAAGGATCCAGCATTGCCATGAGCTGTGGTGTAGGTTGCAGATGCG
GCTCGGATCCCGCATTGCTGTGGCTGTAGCGTAGGCTGGCAGCTACAGCTCTGATTCAAC
CCCTAGCCTAGGAACTTCTGTATGTCGCGGGAGCAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-779, gnl|bosTau2|chr2 (80734668-80735447)
               

               
               1-779, gnl|Hg17|chr12 (104064053-104064841)
               

               
               1-779, gnl|Mm7|chr10 (83136556-83137383)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-779, gnl|bosTau2|chr2 (80734668-80735447)
               

               
               1-779, gnl|Hg17|chr12 (104064053-104064841)
               

               
               1-779, gnl|Mm7|chr10 (83136556-83137383)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               mgm (0.180343)
               

               
               ova (0.129132)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               mgm (0.180343)
               

               
               ova (0.129132)

	1-779, gnl\|bosTau2\|chr2 (80734668-80735447)
	1-779, gnl\|Hg17\|chr12 (104064053-104064841)
	1-779, gnl\|Mm7\|chr10 (83136556-83137383)