Non-Coding RNA Search

Ss1.1-Pig4-TMW8049E21.3

Sequence:


               
               CCAACCCCAAGACAAAGCAGAGCCCCTCTGGCACACCCCACAGTTGCCCTGCTGCAGTAA
ACTTCCAGAAGGCGCCTGCGAGGACTCACCTTGAAGGGAGGAATCGGATAGTTGTTGAAA
GACAGTAATTTGCTCTGCTGTAAATCACCATCGAAGGCCCCAGTGGTTTAACTTGGTACT
CAAATAACGTTTTTGGAGTAAAAATGATCACAAAAGTAATAAAGGACTCCAGCAAAAACA
CCCTTTTATTGTGTTAACCGGTACTGTACTGGTTTGCCAGAGCTGTGTAACTTAGTAAAG
GTGTTGCCTTCCTTGGATCTGTACTCCATGACTTGGTATGCCGCATCGTGGGCTGGTTAT
ATTAACTGAAGAAATCAAGTCACTACCGGAATCTTGCAACACTCGAAACTTAGAGGAACA
GCTGTTCACATCTTTTAGCTTTTCACATTTGCCTAACTTATAAATTGCCATGTGTCAAAA
TCTTGGTTCTGTAATTGCTAAAGCATGATATGTCAGGTTATTTGAATATAATTACCTTTT
GAAGTAATTGTGACCACAAAAACATCTTTTTACGTGAAGAGCTGTACATCATTTGAAATT
ACTCAGATGATGTCTTGATCCGAAGCATAAATCCCAGGGACTTAATGTTTTTAATAATAC
GGTGTCACTGCCAGTTCGGGGGCGGCATCGAAGAAGAAAGAATAACTGGGTAGAAAAAAA
GCGTTGACCTAAACCAACCACTACATGAATCGCTTTGCAGCTTTTATTTATGGGAAATCC
TTGCTTTGGATGCCAGAGGGCAGCTGCAATCTGAAAACCAGTCCAATAAATGCATTTTGT
TTTGTATCTGGTAGCAGGCAGTTAATTATCAACCACTAAAAAAAGAGTATCTTTGATACC
TGGAACAGTTGCATAAAGAGTATTTTTATTAAAAGGTGATTAGCTCTTGCCTTTATTTCC
ACAGTGCTTAATGTGATAAACTTCTAGTCAGGTTTCCTGTAAAACAAACCAATTAATATA
TGTACCTAAACCACAAAAACAGTATACCAAACTGTTTAAAAACTAGTGCTTTTCTACTTA
AAATATTGTTAGCTTAAGACTTGGGATATTTGTAAAAGCCAGTAAGGTTTTTGGTTATCT
TTTGTAACCGGAGATAATTTTTACAATTAAAATCACATTTCAGCTAAACATTGCTGAATA
CTGATATCATTACATTGCCTGTGTAATTTCTGAAAATTATACTTTTTCTGAAAAAGATGT
GATAATACCCTAATGATAAAAAGACTTCTGAACAAAATTTTATCCTGTTTTTTTTTTAAT
CTGATCTTAATGATAAAATTCTATAAATTTTCACTTTCCAGTGTAATAGCTTTAGTTAAG
TAGCTGGTACTTATGGCTTTTACATGTTAAAATATAAATAACATAAGCATTTGAGAGGGC
TAAACTGGAATAAAGTGTTCGTGGATTAGAATTAGACTTACGGATTGTGGGGCATATTAT
CCTATTTAATATGAAAAATGGATCTTATATGAATTAAGAAAAATCTTGTTAATAAAAACT
TATTTTTTAACTAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACCCCAAGACAAAGCAGAGCCCCTCTGGCACACCCCACAGTTGCCCTGCTGCAGTAA
ACTTCCAGAAGGCGCCTGCGAGGACTCACCTTGAAGGGAGGAATCGGATAGTTGTTGAAA
GACAGTAATTTGCTCTGCTGTAAATCACCATCGAAGGCCCCAGTGGTTTAACTTGGTACT
CAAATAACGTTTTTGGAGTAAAAATGATCACAAAAGTAATAAAGGACTCCAGCAAAAACA
CCCTTTTATTGTGTTAACCGGTACTGTACTGGTTTGCCAGAGCTGTGTAACTTAGTAAAG
GTGTTGCCTTCCTTGGATCTGTACTCCATGACTTGGTATGCCGCATCGTGGGCTGGTTAT
ATTAACTGAAGAAATCAAGTCACTACCGGAATCTTGCAACACTCGAAACTTAGAGGAACA
GCTGTTCACATCTTTTAGCTTTTCACATTTGCCTAACTTATAAATTGCCATGTGTCAAAA
TCTTGGTTCTGTAATTGCTAAAGCATGATATGTCAGGTTATTTGAATATAATTACCTTTT
GAAGTAATTGTGACCACAAAAACATCTTTTTACGTGAAGAGCTGTACATCATTTGAAATT
ACTCAGATGATGTCTTGATCCGAAGCATAAATCCCAGGGACTTAATGTTTTTAATAATAC
GGTGTCACTGCCAGTTCGGGGGCGGCATCGAAGAAGAAAGAATAACTGGGTAGAAAAAAA
GCGTTGACCTAAACCAACCACTACATGAATCGCTTTGCAGCTTTTATTTATGGGAAATCC
TTGCTTTGGATGCCAGAGGGCAGCTGCAATCTGAAAACCAGTCCAATAAATGCATTTTGT
TTTGTATCTGGTAGCAGGCAGTTAATTATCAACCACTAAAAAAAGAGTATCTTTGATACC
TGGAACAGTTGCATAAAGAGTATTTTTATTAAAAGGTGATTAGCTCTTGCCTTTATTTCC
ACAGTGCTTAATGTGATAAACTTCTAGTCAGGTTTCCTGTAAAACAAACCAATTAATATA
TGTACCTAAACCACAAAAACAGTATACCAAACTGTTTAAAAACTAGTGCTTTTCTACTTA
AAATATTGTTAGCTTAAGACTTGGGATATTTGTAAAAGCCAGTAAGGTTTTTGGTTATCT
TTTGTAACCGGAGATAATTTTTACAATTAAAATCACATTTCAGCTAAACATTGCTGAATA
CTGATATCATTACATTGCCTGTGTAATTTCTGAAAATTATACTTTTTCTGAAAAAGATGT
GATAATACCCTAATGATAAAAAGACTTCTGAACAAAATTTTATCCTGTTTTTTTTTTAAT
CTGATCTTAATGATAAAATTCTATAAATTTTCACTTTCCAGTGTAATAGCTTTAGTTAAG
TAGCTGGTACTTATGGCTTTTACATGTTAAAATATAAATAACATAAGCATTTGAGAGGGC
TAAACTGGAATAAAGTGTTCGTGGATTAGAATTAGACTTACGGATTGTGGGGCATATTAT
CCTATTTAATATGAAAAATGGATCTTATATGAATTAAGAAAAATCTTGTTAATAAAAACT
TATTTTTTAACTAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               348-685, gnl|bosTau2|chr11 (82928151-82927814)
               

               
               348-685, gnl|Hg17|chr9 (132268422-132268085)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               348-685, gnl|bosTau2|chr11 (82928151-82927814)
               

               
               348-685, gnl|Hg17|chr9 (132268422-132268085)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               lin (0.582411)
               

               
               pro (0.512033)
               

               
               ctl (0.459207)
               

               
               bfe (0.449573)
               

               
               nmm (0.398406)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               ctl (0.459207)
               

               
               bfe (0.449573)
               

               
               nmm (0.398406)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               sme (0.305437)
               

               
               hyp (0.285673)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	348-685, gnl\|bosTau2\|chr11 (82928151-82927814)
	348-685, gnl\|Hg17\|chr9 (132268422-132268085)

	lin (0.582411)
	pro (0.512033)
	ctl (0.459207)
	bfe (0.449573)
	nmm (0.398406)
	kid (0.389206)
	ret (0.3862)
	sme (0.305437)
	hyp (0.285673)
	sug (0.254582)
	tra (0.246184)
	mgp (0.230681)
	cbl (0.229595)
	hea (0.204499)
	fcc (0.197785)
	fty (0.17584)
	rec (0.17307)
	nco (0.161734)
	tbr (0.154178)
	liv (0.146284)
	ssp (0.13552)
	ese (0.126502)
	ebs (0.118301)
	eje (0.0988338)
	ldo (0.0970026)