Non-Coding RNA Search

Ss1.1-Pig4-TMW8049F02.3.5

Sequence:


               
               CCTCCCCCCAAAAGCCATGTACAAAAATGATGCAATTGAGCACACCACGTCTCTGTACAG
CCAGGTCAGTATTTTGGTGACAGACTTAATTTGAATGTTTTAGTGATATTTGGGGGTTAG
ATGGGAGGACAGATTGTCACATCCATCCCAAACTGTCAAACTAGTTGGCGTGGGCTCATT
GGTATTCTTTGCGATACCCCTTAATTGCTGACACCGTATGTATGAAACATGGGCTATGAT
TACTGCAATCACCGTGCGTGCTCCTGGCAGGTGATGCTTAGGACGAGGTAGAAGCAGTAA
CAAGGTACTTGACTAGCTACAGGTGTAATCACAATGCAAGCCCCACCTTTTTCGTGCTAA
GTGTGAAGACTGAAGCCGGATTGGCCAATGAAACAGGAAAACCTGACCAGGTTCTGTAGC
GCCCACTAGACTTGAAATACATTTGTGTTTCTAGAGTCACAGCTCAAGCACTCTGTTTAT
CACGCCCTCTCCCTCATTCAGCCTTCTTCTGTTGGTGCTTTGCATTTTCATGTCCTGTGA
GCCTTGCACGTTATCAAGAGGCTGGATGAAAAATTCTCAGCCCAGCAGGTTCTAGTCCTA
AGAAATGCTCTTACCCAAGTTCACAGGGAGCTGCCTTTTTAAAAAAAATCGTGTTTTCAG
GGTATCACAGATCTGTTTCCTTTTTGACCTCCTGCCAAGACCCCAGTTGAAAATGTGTCA
ATCCTTCCCGCTTTCTCGTTTTATGAAGACAATCAAAGTTGGCCTGAGAAACACAATTTG
TGACTTGTTTAAATGATCGGTGATGTCCTTAAAATGTGGTCTGCCAATCTGTACAAAATG
GTCCTATTTGTGTGAAGAGGGACGTGAGATTAAAATGATGTTATACATCAATATGTATAT
ATGTATTTCTATATAGACTTGGAGAATACTGCCAAAACATTTATGACAAGCTGTATCACT
GCCTTTGTTTATATTTTTTTAACTGTGATATTCCCCACAGGCACATTAACTGTTGCACTT
TTGAATGTCCAAAATTTATATTTTAGAAATAATAAAGAGAAAAATACGTAAATGTTCCCC
AGACGGTGGTGTGGTGAATGTTCGAGAACTAACGCGACAGGAAGGGTCTGCCGACACAAT
TGTATCACAAATGCCCCCTGTTCATGTTTTTGTTTTAAGACGTGTAAATGAAGATCTTTA
TATTTCAATAAATGAGATATATAATTTAAAGTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCCCCAAAAGCCATGTACAAAAATGATGCAATTGAGCACACCACGTCTCTGTACAG
CCAGGTCAGTATTTTGGTGACAGACTTAATTTGAATGTTTTAGTGATATTTGGGGGTTAG
ATGGGAGGACAGATTGTCACATCCATCCCAAACTGTCAAACTAGTTGGCGTGGGCTCATT
GGTATTCTTTGCGATACCCCTTAATTGCTGACACCGTATGTATGAAACATGGGCTATGAT
TACTGCAATCACCGTGCGTGCTCCTGGCAGGTGATGCTTAGGACGAGGTAGAAGCAGTAA
CAAGGTACTTGACTAGCTACAGGTGTAATCACAATGCAAGCCCCACCTTTTTCGTGCTAA
GTGTGAAGACTGAAGCCGGATTGGCCAATGAAACAGGAAAACCTGACCAGGTTCTGTAGC
GCCCACTAGACTTGAAATACATTTGTGTTTCTAGAGTCACAGCTCAAGCACTCTGTTTAT
CACGCCCTCTCCCTCATTCAGCCTTCTTCTGTTGGTGCTTTGCATTTTCATGTCCTGTGA
GCCTTGCACGTTATCAAGAGGCTGGATGAAAAATTCTCAGCCCAGCAGGTTCTAGTCCTA
AGAAATGCTCTTACCCAAGTTCACAGGGAGCTGCCTTTTTAAAAAAAATCGTGTTTTCAG
GGTATCACAGATCTGTTTCCTTTTTGACCTCCTGCCAAGACCCCAGTTGAAAATGTGTCA
ATCCTTCCCGCTTTCTCGTTTTATGAAGACAATCAAAGTTGGCCTGAGAAACACAATTTG
TGACTTGTTTAAATGATCGGTGATGTCCTTAAAATGTGGTCTGCCAATCTGTACAAAATG
GTCCTATTTGTGTGAAGAGGGACGTGAGATTAAAATGATGTTATACATCAATATGTATAT
ATGTATTTCTATATAGACTTGGAGAATACTGCCAAAACATTTATGACAAGCTGTATCACT
GCCTTTGTTTATATTTTTTTAACTGTGATATTCCCCACAGGCACATTAACTGTTGCACTT
TTGAATGTCCAAAATTTATATTTTAGAAATAATAAAGAGAAAAATACGTAAATGTTCCCC
AGACGGTGGTGTGGTGAATGTTCGAGAACTAACGCGACAGGAAGGGTCTGCCGACACAAT
TGTATCACAAATGCCCCCTGTTCATGTTTTTGTTTTAAGACGTGTAAATGAAGATCTTTA
TATTTCAATAAATGAGATATATAATTTAAAGTTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1234, gnl|bosTau2|chr6 (34541394-34540156)
               

               
               3-1234, gnl|Hg17|chr4 (55004092-55005340)
               

               
               3-1234, gnl|Mm7|chr5 (74615073-74616464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1234, gnl|bosTau2|chr6 (34541394-34540156)
               

               
               3-1234, gnl|Hg17|chr4 (55004092-55005340)
               

               
               3-1234, gnl|Mm7|chr5 (74615073-74616464)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               rec (0.519211)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               eye (0.341006)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               aor (0.390549)
               

               
               ova (0.387397)
               

               
               eye (0.341006)
               

               
               liv (0.292569)
               

               
               csk (0.281492)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	3-1234, gnl\|bosTau2\|chr6 (34541394-34540156)
	3-1234, gnl\|Hg17\|chr4 (55004092-55005340)
	3-1234, gnl\|Mm7\|chr5 (74615073-74616464)

	rec (0.519211)
	aor (0.390549)
	ova (0.387397)
	eye (0.341006)
	liv (0.292569)
	csk (0.281492)
	ese (0.253004)
	cbe (0.239234)
	spc (0.226732)
	cty (0.20816)
	cmu (0.186393)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	mga (0.160205)
	fco (0.157208)
	ski (0.146735)
	kid (0.129735)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)
	eje (0.0988338)