Non-Coding RNA Search

Ss1.1-Pig4-TMW8049F13.3.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTGAGCTGAGCTGCTTATTTATTGAAAATAAATGACAGAAAAC
TCTGGCCTCCTTGTCTCCGCACACATCTTGGGGCTTGGCTTGGGCCCCTGGGGACAAGCA
TCTTAGTGTCATGCAGTCCACGGAGCAGCCACTTGTCTGGGGTTGCATGTGTGGCGGGAC
CCGGGGACATGACCTGAGCCTCCCAGCCACCAACTCAGCTCGATGGTGGCTCGGGAAAGG
GGACGAGTGGTAACAGGCGTGGCTGTTAGTGTGGCTGGGGTGGGGCCGGGGCGGGAGGGT
CAGGACCCAGGAGGCAGCATAGCAGCCAGAAAGCTAAAGGCCCGAGCCTGCCCTTGGGCT
CCCGCAGGGGTTGGGGACCCCCACCTAGGGGTCATCTTTGGAAGCAGAAGGCTCGGCCTC
CCCAGGGAGGCGGCACACGAGGGACAGGACAGCGGTGGCTCTGTCACCTCAACCCCAGGC
TTGGAGAGGGTGAAGACTCCATTCTGAGACACCCCCCCCAAAAGCCTCGGCCTCACAGTT
CAGGAGTGGAGAAAGGCGATCTCCCCCACGGGTGGGCAGGTGCTGGCCCCTCAGGTGTCC
TTGATGTCCCTGATGTCCCTGAGGGGCGCCTCGTCCATGATGCTGCGCACTTGCTCCAGA
CTCTCTGCCTGGCGGATCCGCTCCAGGCGCACCTGCAGGGCCTGGGACAGCCGTACGAAA
TCCCTCTGCACCTGCTCACTGGTCTCCAGCTCAGCCTGCAGCCGCAGCATCTTTGCCCTC
TGTTCCGAGAGGAGGTCTGTGAGCTGGACCTTGCTCTGCTCCTGCTGGACCCGCTCCATC
TCCATCCTCAGGCTGCACAGGGAGGCCTCTAACACTTCTGTCTCCTCCCGCTGCACCCTC
AGCTGCCCCTCCAGGCTGGCCCTCGCCGCCGTCTCCTCCTCCAGCGCCTCCCGCAGCGTC
ACAATCTCGATCCGCAGCCGCTCCGCCTCGTGCTCCCGGGCCTGCTGCTGGGCCCGAGCC
TCCTGCTGTGTGCGGAGCACCAGCTGCTGCAGCTCCGGCAGTGATTTGGGCAGCGTCTCC
TCCTGGCCCTCGTCCGGCTCCAGGCCCCGGGCGGCTAAAGACGGCGGCTGCTCGGCCCGG
AGCCCTTGGTTTTCCTCGGTCAGTCGCTTGACCTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTGAGCTGAGCTGCTTATTTATTGAAAATAAATGACAGAAAAC
TCTGGCCTCCTTGTCTCCGCACACATCTTGGGGCTTGGCTTGGGCCCCTGGGGACAAGCA
TCTTAGTGTCATGCAGTCCACGGAGCAGCCACTTGTCTGGGGTTGCATGTGTGGCGGGAC
CCGGGGACATGACCTGAGCCTCCCAGCCACCAACTCAGCTCGATGGTGGCTCGGGAAAGG
GGACGAGTGGTAACAGGCGTGGCTGTTAGTGTGGCTGGGGTGGGGCCGGGGCGGGAGGGT
CAGGACCCAGGAGGCAGCATAGCAGCCAGAAAGCTAAAGGCCCGAGCCTGCCCTTGGGCT
CCCGCAGGGGTTGGGGACCCCCACCTAGGGGTCATCTTTGGAAGCAGAAGGCTCGGCCTC
CCCAGGGAGGCGGCACACGAGGGACAGGACAGCGGTGGCTCTGTCACCTCAACCCCAGGC
TTGGAGAGGGTGAAGACTCCATTCTGAGACACCCCCCCCAAAAGCCTCGGCCTCACAGTT
CAGGAGTGGAGAAAGGCGATCTCCCCCACGGGTGGGCAGGTGCTGGCCCCTCAGGTGTCC
TTGATGTCCCTGATGTCCCTGAGGGGCGCCTCGTCCATGATGCTGCGCACTTGCTCCAGA
CTCTCTGCCTGGCGGATCCGCTCCAGGCGCACCTGCAGGGCCTGGGACAGCCGTACGAAA
TCCCTCTGCACCTGCTCACTGGTCTCCAGCTCAGCCTGCAGCCGCAGCATCTTTGCCCTC
TGTTCCGAGAGGAGGTCTGTGAGCTGGACCTTGCTCTGCTCCTGCTGGACCCGCTCCATC
TCCATCCTCAGGCTGCACAGGGAGGCCTCTAACACTTCTGTCTCCTCCCGCTGCACCCTC
AGCTGCCCCTCCAGGCTGGCCCTCGCCGCCGTCTCCTCCTCCAGCGCCTCCCGCAGCGTC
ACAATCTCGATCCGCAGCCGCTCCGCCTCGTGCTCCCGGGCCTGCTGCTGGGCCCGAGCC
TCCTGCTGTGTGCGGAGCACCAGCTGCTGCAGCTCCGGCAGTGATTTGGGCAGCGTCTCC
TCCTGGCCCTCGTCCGGCTCCAGGCCCCGGGCGGCTAAAGACGGCGGCTGCTCGGCCCGG
AGCCCTTGGTTTTCCTCGGTCAGTCGCTTGACCTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61836281|ref|XP_587360.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836281|ref|XP_587360.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               18-135, - strand, RNAz p=0.507457
               

               
               290-430, - strand, RNAz p=0.904764
               

               
               336-529, - strand, RNAz p=0.983261
               

               
               509-668, - strand, RNAz p=0.667357

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               18-135, - strand, RNAz p=0.507457
               

               
               290-430, - strand, RNAz p=0.904764
               

               
               336-529, - strand, RNAz p=0.983261
               

               
               509-668, - strand, RNAz p=0.667357

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of BC058900, -
               

               
               5' of BC058900, -
               

               
               5' of BC058900, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC058900, -
               

               
               5' of BC058900, -
               

               
               5' of BC058900, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               18-705, gnl|bosTau2|chr25 (24878261-24877596)
               

               
               18-705, gnl|canFam2|chr6 (21412327-21412781)
               

               
               18-705, gnl|dasNov1|scaffold_13617 (3108-2691)
               

               
               18-705, gnl|hg17|chr16 (28823222-28823634)
               

               
               18-705, gnl|Hg17|chr16 (28823242-28823879)
               

               
               18-705, gnl|mm7|chr7 (122542482-122542085)
               

               
               18-705, gnl|Mm7|chr7 (122542460-122541842)
               

               
               18-705, gnl|monDom2|scaffold_5 (119373840-119373376)
               

               
               18-705, gnl|oryCun1|scaffold_214919 (40454-40120)
               

               
               18-705, gnl|panTro1|chr18 (29545221-29545633)
               

               
               18-705, gnl|rheMac2|chr20 (26941935-26941524)
               

               
               18-705, gnl|rn3|chr1 (185703569-185703197)
               


               
               878-1056, gnl|bosTau2|chr25 (24876552-24876374)
               

               
               878-1056, gnl|Hg17|chr16 (28824841-28825019)
               

               
               878-1056, gnl|Mm7|chr7 (122540865-122540687)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-705, gnl|bosTau2|chr25 (24878261-24877596)
               

               
               18-705, gnl|canFam2|chr6 (21412327-21412781)
               

               
               18-705, gnl|dasNov1|scaffold_13617 (3108-2691)
               

               
               18-705, gnl|hg17|chr16 (28823222-28823634)
               

               
               18-705, gnl|Hg17|chr16 (28823242-28823879)
               

               
               18-705, gnl|mm7|chr7 (122542482-122542085)
               

               
               18-705, gnl|Mm7|chr7 (122542460-122541842)
               

               
               18-705, gnl|monDom2|scaffold_5 (119373840-119373376)
               

               
               18-705, gnl|oryCun1|scaffold_214919 (40454-40120)
               

               
               18-705, gnl|panTro1|chr18 (29545221-29545633)
               

               
               18-705, gnl|rheMac2|chr20 (26941935-26941524)
               

               
               18-705, gnl|rn3|chr1 (185703569-185703197)
               


               
               878-1056, gnl|bosTau2|chr25 (24876552-24876374)
               

               
               878-1056, gnl|Hg17|chr16 (28824841-28825019)
               

               
               878-1056, gnl|Mm7|chr7 (122540865-122540687)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

	18-135, - strand, RNAz p=0.507457
	290-430, - strand, RNAz p=0.904764
	336-529, - strand, RNAz p=0.983261
	509-668, - strand, RNAz p=0.667357

	18-705, gnl\|bosTau2\|chr25 (24878261-24877596)
	18-705, gnl\|canFam2\|chr6 (21412327-21412781)
	18-705, gnl\|dasNov1\|scaffold_13617 (3108-2691)
	18-705, gnl\|hg17\|chr16 (28823222-28823634)
	18-705, gnl\|Hg17\|chr16 (28823242-28823879)
	18-705, gnl\|mm7\|chr7 (122542482-122542085)
	18-705, gnl\|Mm7\|chr7 (122542460-122541842)
	18-705, gnl\|monDom2\|scaffold_5 (119373840-119373376)
	18-705, gnl\|oryCun1\|scaffold_214919 (40454-40120)
	18-705, gnl\|panTro1\|chr18 (29545221-29545633)
	18-705, gnl\|rheMac2\|chr20 (26941935-26941524)
	18-705, gnl\|rn3\|chr1 (185703569-185703197)

	878-1056, gnl\|bosTau2\|chr25 (24876552-24876374)
	878-1056, gnl\|Hg17\|chr16 (28824841-28825019)
	878-1056, gnl\|Mm7\|chr7 (122540865-122540687)