Non-Coding RNA Search

Ss1.1-Pig4-TMW8049G02.5

Sequence:


               
               GGCATATCCTTTTCTTTGGCCACACCCATAGTATGTGGAAGTTTCTGGGCCAGGAATTGA
ACCAGAGCCATGGCAGCAACCCAAGCCGCTGTAGTTACAATGCTGGATCCTTAACCCGCT
GTGCCACAAGAGAACTGAAAGTGGCCTATCTCGATCCTTCCCTTTTGGCTCACATTGCTC
CTAAAGACCCTTGACTGTTGGACCCCTGTTGAAGAGTTAATGAACAAAATTGGTCTTTGG
GGCCATTATTAGTCACACCCCATCTGAGTGGCCTCTTGAGAAAACCCCTTTTTAAAGCCC
CACTTTAACCTTTATTTGCAACATCAGGCCAAACCTGGGTGCGTAATCTGGTAGGAGAAG
GCTTGGGACTCCTTCCCCTAGTGCTCAGATTTAGTTAACTCATGGCTTTTTCTTTGACCA
ACATAGCACATAACTACATATCAAGGAAGTTAAATAGCATGCTTGAAAAAACACATGTCT
GTTTCACCTTTCACTGTTTAAGCCAATGAAACCTTTCAAATTTTATGTGTTGGGCTTTTA
TGTAGCACTTTACATTTTCATGCTGCTTATAGTTTTATTCTACTGAAATAAATGAATTTC
ATCAAAATTCTCAATTTTTAAAAAGAACTTTTAAAATTGTTTCTTATTTTGACTAAGAAA
ACAAAATTTCCTATTTCAGGAGAATAAGAGATCTTTTTGTTATTTTTGGCTATGAATAAA
CTCTGGTACCTTGAGACCTCCCATTTTTATAGAGCAGAATCAGTAAATAAGAAGACCTCA
CACAAATGGACTTAGTTGTGCAGCAGTATTGAAAATCTTATACTGTTTTATTACTTGCAA
AGAAGAATATAAAAGGTGAATGCCTTTATTTAGTGAGCCTGACTTTTAACGAAGAATTAC
ATGTACATTAACATGTACTATTACAGCCTTTGTGGGAGGCTGTAATTGCTCAAAAGCTGT
TTGGAACGCCTCTTTAAAAGTTGCCTTCAGAACTAGTTTGAGCTGCTCAATAAAACCAGT
GACTTTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATATCCTTTTCTTTGGCCACACCCATAGTATGTGGAAGTTTCTGGGCCAGGAATTGA
ACCAGAGCCATGGCAGCAACCCAAGCCGCTGTAGTTACAATGCTGGATCCTTAACCCGCT
GTGCCACAAGAGAACTGAAAGTGGCCTATCTCGATCCTTCCCTTTTGGCTCACATTGCTC
CTAAAGACCCTTGACTGTTGGACCCCTGTTGAAGAGTTAATGAACAAAATTGGTCTTTGG
GGCCATTATTAGTCACACCCCATCTGAGTGGCCTCTTGAGAAAACCCCTTTTTAAAGCCC
CACTTTAACCTTTATTTGCAACATCAGGCCAAACCTGGGTGCGTAATCTGGTAGGAGAAG
GCTTGGGACTCCTTCCCCTAGTGCTCAGATTTAGTTAACTCATGGCTTTTTCTTTGACCA
ACATAGCACATAACTACATATCAAGGAAGTTAAATAGCATGCTTGAAAAAACACATGTCT
GTTTCACCTTTCACTGTTTAAGCCAATGAAACCTTTCAAATTTTATGTGTTGGGCTTTTA
TGTAGCACTTTACATTTTCATGCTGCTTATAGTTTTATTCTACTGAAATAAATGAATTTC
ATCAAAATTCTCAATTTTTAAAAAGAACTTTTAAAATTGTTTCTTATTTTGACTAAGAAA
ACAAAATTTCCTATTTCAGGAGAATAAGAGATCTTTTTGTTATTTTTGGCTATGAATAAA
CTCTGGTACCTTGAGACCTCCCATTTTTATAGAGCAGAATCAGTAAATAAGAAGACCTCA
CACAAATGGACTTAGTTGTGCAGCAGTATTGAAAATCTTATACTGTTTTATTACTTGCAA
AGAAGAATATAAAAGGTGAATGCCTTTATTTAGTGAGCCTGACTTTTAACGAAGAATTAC
ATGTACATTAACATGTACTATTACAGCCTTTGTGGGAGGCTGTAATTGCTCAAAAGCTGT
TTGGAACGCCTCTTTAAAAGTTGCCTTCAGAACTAGTTTGAGCTGCTCAATAAAACCAGT
GACTTTAAAAAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               135-809, gnl|bosTau2|chr9 (34194809-34195500)
               

               
               135-809, gnl|Hg17|chr6 (90093979-90093290)
               

               
               135-809, gnl|Mm7|chr4 (33330329-33330918)
               


               
               312-607, gnl|bosTau2|chr3 (57878756-57879049)
               

               
               312-607, gnl|Hg17|chr6 (90093793-90093499)
               


               
               914-1024, gnl|bosTau2|chr9 (34195745-34195851)
               

               
               914-1024, gnl|Hg17|chr6 (90093183-90093070)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-809, gnl|bosTau2|chr9 (34194809-34195500)
               

               
               135-809, gnl|Hg17|chr6 (90093979-90093290)
               

               
               135-809, gnl|Mm7|chr4 (33330329-33330918)
               


               
               312-607, gnl|bosTau2|chr3 (57878756-57879049)
               

               
               312-607, gnl|Hg17|chr6 (90093793-90093499)
               


               
               914-1024, gnl|bosTau2|chr9 (34195745-34195851)
               

               
               914-1024, gnl|Hg17|chr6 (90093183-90093070)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	135-809, gnl\|bosTau2\|chr9 (34194809-34195500)
	135-809, gnl\|Hg17\|chr6 (90093979-90093290)
	135-809, gnl\|Mm7\|chr4 (33330329-33330918)

	312-607, gnl\|bosTau2\|chr3 (57878756-57879049)
	312-607, gnl\|Hg17\|chr6 (90093793-90093499)

	914-1024, gnl\|bosTau2\|chr9 (34195745-34195851)
	914-1024, gnl\|Hg17\|chr6 (90093183-90093070)

	fhi (0.169578)
	liv (0.146284)
	spl (0.143184)
	ova (0.129132)
	sug (0.127291)
	ldo (0.0970026)