Non-Coding RNA Search

Ss1.1-Pig4-TMW8049G10.3

Sequence:


               
               TGTAGCTAGTTGCTGACTCATATCTCAGGTTTTTCTACGTGTGAGAAATGGACAGTCCTT
TGAGTAGGATGTGACTTCATGTTTCCTATGGTGACAGCTAAAACCAGCATAGAATGACAT
GATTCAAAACTGACTTGATCGTGACGATTACACGCTTCATAGAACATAACTGGTTACTCA
TAAATTTATGACGGGCAGTGACGGGGTATGAAATGGGGGAGTCAACTGTGGCGGGAGTGC
GTCACCACCATGTGGGAAAAGTTCTGTTCGGTGATTTCGTTTTTCTAAATGCGTTTAAGT
TTGGATGTCATCAGACATTATCCAGGTTTGACAGAGTAGTTTTTGATGTGTTTTGTACAC
ACGCACCGAATGTACTTCCAGAGTCTGGTCACAACCGTGGAACATTTTTCAGCAATGAAA
GCAGTGGCTCCAGTGGATGTTTCAGGACGGTGGCGGGACTTGGTTTTAAAGAGATGTTTG
GGGGAAAACCGGCCTTTCAACATTTGGGATTTCTCTTGGCCATGGTCCCCTTCCTTCCTG
TGACTGATGGGGTCATGACAGCCTTAGTCTTTGATGGCTAACAGCAAATGAGCAGTCCTT
GGAGTCCAGACGGCCCTGCCCAATGGGCAGCTTCAGGCCCGCCCCGGCGCAGCAGGGACA
GCACTGGCGGGTTGGTGGCTGGCCCTCTGCAGGGTGGGGTCAGAGAGGGGAGCCCTGGAT
GATACCAGATGATACAGAATGGTGATCGGAAAGAGCAGAACTAGACTTCTCTGTGAGAAA
TGCTGGGAAATGGTTTAGGACATTTGTAAAGTTTGGTGGCAATGTGTAAATGTTTATTAT
GAATAGAGTGTTCTTTTGGAGCAAGGCAAGCTGCTGAATGGTTAAATCGTGCATTTCTCA
TTTTGATGTGTCATGAATGTTAATACGATGAAATAAAATCAAAACTGGTACCTGTTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAGCTAGTTGCTGACTCATATCTCAGGTTTTTCTACGTGTGAGAAATGGACAGTCCTT
TGAGTAGGATGTGACTTCATGTTTCCTATGGTGACAGCTAAAACCAGCATAGAATGACAT
GATTCAAAACTGACTTGATCGTGACGATTACACGCTTCATAGAACATAACTGGTTACTCA
TAAATTTATGACGGGCAGTGACGGGGTATGAAATGGGGGAGTCAACTGTGGCGGGAGTGC
GTCACCACCATGTGGGAAAAGTTCTGTTCGGTGATTTCGTTTTTCTAAATGCGTTTAAGT
TTGGATGTCATCAGACATTATCCAGGTTTGACAGAGTAGTTTTTGATGTGTTTTGTACAC
ACGCACCGAATGTACTTCCAGAGTCTGGTCACAACCGTGGAACATTTTTCAGCAATGAAA
GCAGTGGCTCCAGTGGATGTTTCAGGACGGTGGCGGGACTTGGTTTTAAAGAGATGTTTG
GGGGAAAACCGGCCTTTCAACATTTGGGATTTCTCTTGGCCATGGTCCCCTTCCTTCCTG
TGACTGATGGGGTCATGACAGCCTTAGTCTTTGATGGCTAACAGCAAATGAGCAGTCCTT
GGAGTCCAGACGGCCCTGCCCAATGGGCAGCTTCAGGCCCGCCCCGGCGCAGCAGGGACA
GCACTGGCGGGTTGGTGGCTGGCCCTCTGCAGGGTGGGGTCAGAGAGGGGAGCCCTGGAT
GATACCAGATGATACAGAATGGTGATCGGAAAGAGCAGAACTAGACTTCTCTGTGAGAAA
TGCTGGGAAATGGTTTAGGACATTTGTAAAGTTTGGTGGCAATGTGTAAATGTTTATTAT
GAATAGAGTGTTCTTTTGGAGCAAGGCAAGCTGCTGAATGGTTAAATCGTGCATTTCTCA
TTTTGATGTGTCATGAATGTTAATACGATGAAATAAAATCAAAACTGGTACCTGTTTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               436-552, + strand, RNAz p=0.995381

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-552, + strand, RNAz p=0.995381

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               484-589, + strand, RNAmicro p=0.999998

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               484-589, + strand, RNAmicro p=0.999998

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-589, gnl|bosTau2|chr7 (1164251-1164856)
               

               
               1-589, gnl|canFam2|chr27 (36850233-36849484)
               

               
               1-589, gnl|dasNov1|scaffold_2805 (66099-65305)
               

               
               1-589, gnl|echTel1|scaffold_320556 (2879-2133)
               

               
               1-589, gnl|galGal2|chrUn (34679902-34680698)
               

               
               1-589, gnl|hg17|chr12 (12518475-12519239)
               

               
               1-589, gnl|Hg17|chr12 (12519392-12518806)
               

               
               1-589, gnl|mm7|chr6 (134729836-134730550)
               

               
               1-589, gnl|Mm7|chr6 (134730703-134730118)
               

               
               1-589, gnl|monDom2|scaffold_31 (18915342-18914567)
               

               
               1-589, gnl|oryCun1|scaffold_202753 (75661-74963)
               

               
               1-589, gnl|panTro1|chrUn_random (38768441-38769208)
               

               
               1-589, gnl|rheMac2|chr11 (12826669-12827404)
               

               
               1-589, gnl|rn3|chr4 (171865374-171866088)
               


               
               637-960, gnl|bosTau2|chr7 (1164882-1165205)
               

               
               637-960, gnl|Hg17|chr12 (12518756-12518427)
               

               
               637-960, gnl|Mm7|chr6 (134730084-134729795)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-589, gnl|bosTau2|chr7 (1164251-1164856)
               

               
               1-589, gnl|canFam2|chr27 (36850233-36849484)
               

               
               1-589, gnl|dasNov1|scaffold_2805 (66099-65305)
               

               
               1-589, gnl|echTel1|scaffold_320556 (2879-2133)
               

               
               1-589, gnl|galGal2|chrUn (34679902-34680698)
               

               
               1-589, gnl|hg17|chr12 (12518475-12519239)
               

               
               1-589, gnl|Hg17|chr12 (12519392-12518806)
               

               
               1-589, gnl|mm7|chr6 (134729836-134730550)
               

               
               1-589, gnl|Mm7|chr6 (134730703-134730118)
               

               
               1-589, gnl|monDom2|scaffold_31 (18915342-18914567)
               

               
               1-589, gnl|oryCun1|scaffold_202753 (75661-74963)
               

               
               1-589, gnl|panTro1|chrUn_random (38768441-38769208)
               

               
               1-589, gnl|rheMac2|chr11 (12826669-12827404)
               

               
               1-589, gnl|rn3|chr4 (171865374-171866088)
               


               
               637-960, gnl|bosTau2|chr7 (1164882-1165205)
               

               
               637-960, gnl|Hg17|chr12 (12518756-12518427)
               

               
               637-960, gnl|Mm7|chr6 (134730084-134729795)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               pla (0.133672)

	1-589, gnl\|bosTau2\|chr7 (1164251-1164856)
	1-589, gnl\|canFam2\|chr27 (36850233-36849484)
	1-589, gnl\|dasNov1\|scaffold_2805 (66099-65305)
	1-589, gnl\|echTel1\|scaffold_320556 (2879-2133)
	1-589, gnl\|galGal2\|chrUn (34679902-34680698)
	1-589, gnl\|hg17\|chr12 (12518475-12519239)
	1-589, gnl\|Hg17\|chr12 (12519392-12518806)
	1-589, gnl\|mm7\|chr6 (134729836-134730550)
	1-589, gnl\|Mm7\|chr6 (134730703-134730118)
	1-589, gnl\|monDom2\|scaffold_31 (18915342-18914567)
	1-589, gnl\|oryCun1\|scaffold_202753 (75661-74963)
	1-589, gnl\|panTro1\|chrUn_random (38768441-38769208)
	1-589, gnl\|rheMac2\|chr11 (12826669-12827404)
	1-589, gnl\|rn3\|chr4 (171865374-171866088)

	637-960, gnl\|bosTau2\|chr7 (1164882-1165205)
	637-960, gnl\|Hg17\|chr12 (12518756-12518427)
	637-960, gnl\|Mm7\|chr6 (134730084-134729795)