Non-Coding RNA Search

Ss1.1-Pig4-TMW8049G17.3

Sequence:


               
               GGGAACTATGTAGGTCCTCCAGGAGGTGGAGGGCCACCAGGAACACCCATCATGCCTAGT
CCAGCAGATTCAACCAACTCTGGAGACAACATGTATACTTTAATGAATGCAGTACCTCCG
GGACCTAACAGGCCTAATTTTCCAATGGGCCCTGGGTCAGATGGTCCCATGGGTGGATTA
GGAGGAATGGAGTCACATCACATGAATGGCTCATTAGGCTCAGGAGACATGGACAGTATT
TCCAAGAATTCTCCCAATAATATGAGCCTGAGTAATCAACCGGGCACCCCGAGGGATGAT
GGCGAAATGGGGGGAAATTTCTTAAATCCTTTTCAGAGTGAGAGTTACTCCCCTAGCATG
ACAATGAGCGTGTGATCCATTACCGAGTCTCCTCATGACAACCACAGTGAGTCAGCCCTT
CACAGAACTACTACGGAAGAAAATTATTCATCACAGTGTACAGTTAAACAAAGAAATCTC
AGTCACACCAAACCAACCTTTTTATTTCCTGCTCTCTCCCCTATTTTGTGAAGAAAGCGG
GTCCCAACGTGATTCGAACAACTGTACGGAGCGGCATATTTTAGAATTGCCCTCAACTGA
ACTGCAAATGATTATCTGTGTATGTATATGTGTGGGAAAGAGAATGTAGTGTATGTGTGT
ATGTTCTATGGACATAGGCACATACGTACATTACCCACAGGACATTGTAAAATATTATCA
CATGACATCTTAAGTAGAACTAAGTAGGGACTTTTATTCCATCCTTTTTTTCACGTTTAC
ATTTTAATTATTAAAAGTTGCTCCTGCCCCTCCCTGAACTATTTTGTGCTGTGTATATCA
CTGCTTTATATAAGTTATTTTTTAAGGTGAACTCAGATGTTATGGTTTTGTAAATGTCTG
CAATCATGGATAGGAATAAAATCGCTTATTTGAGAGCTTTCATTAAATTGCGTGTGATGC
AAGTTATCCTGTGAATCATAAAGTGTACTGTCTCAGAAAAGAAGTGTATCTTCATCTTCA
TGTCCAGCAATTTCTCAGTTACCTTCAGTGAGAAGTATTTTTGTACTTTTTTTTTTTTTT
AGGAAAAATACTTCGAATCAACAAGCTTAACTGGGAGGACCTAACACATATTTCTGCAAT
AACTGCTCTAGATGGAATTCTTGATTTGCTTGTCTTAGATGATACAGAAAATCATTAAGT
AGCCACAATTGCTTAGACCATAGCAATAAAGTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAACTATGTAGGTCCTCCAGGAGGTGGAGGGCCACCAGGAACACCCATCATGCCTAGT
CCAGCAGATTCAACCAACTCTGGAGACAACATGTATACTTTAATGAATGCAGTACCTCCG
GGACCTAACAGGCCTAATTTTCCAATGGGCCCTGGGTCAGATGGTCCCATGGGTGGATTA
GGAGGAATGGAGTCACATCACATGAATGGCTCATTAGGCTCAGGAGACATGGACAGTATT
TCCAAGAATTCTCCCAATAATATGAGCCTGAGTAATCAACCGGGCACCCCGAGGGATGAT
GGCGAAATGGGGGGAAATTTCTTAAATCCTTTTCAGAGTGAGAGTTACTCCCCTAGCATG
ACAATGAGCGTGTGATCCATTACCGAGTCTCCTCATGACAACCACAGTGAGTCAGCCCTT
CACAGAACTACTACGGAAGAAAATTATTCATCACAGTGTACAGTTAAACAAAGAAATCTC
AGTCACACCAAACCAACCTTTTTATTTCCTGCTCTCTCCCCTATTTTGTGAAGAAAGCGG
GTCCCAACGTGATTCGAACAACTGTACGGAGCGGCATATTTTAGAATTGCCCTCAACTGA
ACTGCAAATGATTATCTGTGTATGTATATGTGTGGGAAAGAGAATGTAGTGTATGTGTGT
ATGTTCTATGGACATAGGCACATACGTACATTACCCACAGGACATTGTAAAATATTATCA
CATGACATCTTAAGTAGAACTAAGTAGGGACTTTTATTCCATCCTTTTTTTCACGTTTAC
ATTTTAATTATTAAAAGTTGCTCCTGCCCCTCCCTGAACTATTTTGTGCTGTGTATATCA
CTGCTTTATATAAGTTATTTTTTAAGGTGAACTCAGATGTTATGGTTTTGTAAATGTCTG
CAATCATGGATAGGAATAAAATCGCTTATTTGAGAGCTTTCATTAAATTGCGTGTGATGC
AAGTTATCCTGTGAATCATAAAGTGTACTGTCTCAGAAAAGAAGTGTATCTTCATCTTCA
TGTCCAGCAATTTCTCAGTTACCTTCAGTGAGAAGTATTTTTGTACTTTTTTTTTTTTTT
AGGAAAAATACTTCGAATCAACAAGCTTAACTGGGAGGACCTAACACATATTTCTGCAAT
AACTGCTCTAGATGGAATTCTTGATTTGCTTGTCTTAGATGATACAGAAAATCATTAAGT
AGCCACAATTGCTTAGACCATAGCAATAAAGTGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T865_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T865_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-314, + strand, RNAz p=0.892979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-314, + strand, RNAz p=0.892979

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-659, gnl|bosTau2|chr3 (16154454-16153802)
               

               
               1-659, gnl|Hg17|chr6 (83030787-83029810)
               

               
               1-659, gnl|Mm7|chr4 (53676796-53677433)
               


               
               661-862, gnl|bosTau2|chr3 (16150513-16150311)
               

               
               661-862, gnl|Hg17|chr6 (83029807-83029600)
               

               
               661-862, gnl|Mm7|chr4 (53677438-53677634)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-659, gnl|bosTau2|chr3 (16154454-16153802)
               

               
               1-659, gnl|Hg17|chr6 (83030787-83029810)
               

               
               1-659, gnl|Mm7|chr4 (53676796-53677433)
               


               
               661-862, gnl|bosTau2|chr3 (16150513-16150311)
               

               
               661-862, gnl|Hg17|chr6 (83029807-83029600)
               

               
               661-862, gnl|Mm7|chr4 (53677438-53677634)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               thg (0.380373)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1-659, gnl\|bosTau2\|chr3 (16154454-16153802)
	1-659, gnl\|Hg17\|chr6 (83030787-83029810)
	1-659, gnl\|Mm7\|chr4 (53676796-53677433)

	661-862, gnl\|bosTau2\|chr3 (16150513-16150311)
	661-862, gnl\|Hg17\|chr6 (83029807-83029600)
	661-862, gnl\|Mm7\|chr4 (53677438-53677634)

	thg (0.380373)
	isp (0.300752)
	liv (0.292569)
	fce (0.271592)
	pgl (0.236967)
	ecc (0.23007)
	ldo (0.194005)
	cmu (0.186393)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	rec (0.17307)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	mga (0.160205)
	fco (0.157208)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)
	cty (0.10408)