Non-Coding RNA Search

Ss1.1-Pig4-TMW8049G21.3

Sequence:


               
               ATTTTGTCAGTAGTTGATCAAGCAGTTTTCTGAGAGCTCTTCTATGCAATGATGCATTCT
TCAACGTCCAAAATGTTGAGTTAAAAAAAGATTTGAAGGTCAAATGCCTTAAGAGTTTTA
ACAAAAAATGGCGCTTGGACAAAGGCTGTGTGTTGGATGTTTTAAACTCATGAGGCATCA
TGAATTTCAGGTGTGGCCCAGAGTAAGAAGTGCTTTTTGACGGATGACTTCGAATAGACT
TCTGTTACTTTGGGGCTCACCTAAAAATTTTCAGATTGTATTGTTTAGAGAATTCTATAC
TCTTTTAATCATAAATATTTCACCATTGAATCCATGAAACTGAAATAGAAAATATGGCTT
ATTAGACTAATTAGCTAAAAATCTGCCCATTGGAAAGTGGAAGAGCTTTCTCTGAGTGCT
GAGTTTTTTAATTTAGTTTTCTGTTTGGAAAGGATATTAAGAGTTCAGATATCTTTCTTC
TCATGTAGCACGTTTGAAATACCATTATTTCTGGTTTTGTGGAAAGTGACATGAGCTGGA
GAGGGCAGAATGTGGCCTCTGCTAGCCATTCGCAGCTGTGACCTCCCAGCAGAGTCCACG
TCAGGGTGCTTGGATCACGCTGCGCCCTCTACCTAGCCAGCATAGCAGTATTACTCTGTA
GGTGTTGCACATCTGACTTTTGTTAATCATTTTTTAAAACTTTCTCAATTTGTTTATTTC
TCTTCAGAAAGAAGTGTTTTTAAACAGTGTATATGCTTTTTAAAGAAAAGTACTGTGGCT
GAGAACCCTGTGGATTTTTTATTATGTTGTCTGTCATAAATAAGCTAACATAGATCAGTT
GTAGGCTGTGTCTGCAGAGATATGCAGCTGGAAGTCAGAGCCCGACGTCACAACAGTCTT
GCCAAAGAGAGAGCCTGAGTGGAAGATGTGTTTGATATTTTTCAGCACTAAGCGTGAGGC
TGCTTGCACAGCGTAAGAATAGTGTTCAGATTTGTTGACTAGTCAGTATATAGATTCGTA
GCCTCTGACTGACTGAGAGTCTTAACGGTGTAGCAGAAGTCACCGTTGTTTTTCTGTCTT
CAGATTTGTCCGTTCAAAAGATGGCTCATTGCTTTTTAAGATGACTTTAGCATTCGAAGC
AAAGAGAAGACCAGTGAGAGACATGAACTAAAACAGCGTAGGTGAATTTTGATTTGTGAT
TCACCAAATGAGACTTAATAATAACTCAAGAAAAAAAAAAATGCTGCCAAAATATATTAA
ATATTTAGGTAGCTTATTAGTGGGAAGATGAAATACTTGTCCTTTTTAGGCCTATCCTTA
ATAAACTAGGAAATTGGTGACTCAAAAGTTTGAAATTTTCATCAATATGAAGCTCGTTTG
TTTCTTTCCTAGTCAAGAGGAACTCATTGGAAATGCCGTTATAATTTAAATTTGTTAGTT
TCTGATAAGTATAATGATTGGTATGCTACCAACCTGGTGTAATAGTATAATACCAGCCAA
AATACAATTTGAGACACATCTATCTCATTTAACCGTTTATTTGAACATGGAAGCTTATTT
TTCAGGCAAAAGAAACATAATAGTTTTTAAAAGTGTAACTGTAAGAATAACTGTATGATG
ACCTTGAAGAGCACTGTTTTTTATTTCATGCCCCCTCTGTGTTTGAGCTCTGCTTATTTT
TTTCAGAGGCATTATTTTTACTGTAAGCTCCAAAGTGTAAGAATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTGTCAGTAGTTGATCAAGCAGTTTTCTGAGAGCTCTTCTATGCAATGATGCATTCT
TCAACGTCCAAAATGTTGAGTTAAAAAAAGATTTGAAGGTCAAATGCCTTAAGAGTTTTA
ACAAAAAATGGCGCTTGGACAAAGGCTGTGTGTTGGATGTTTTAAACTCATGAGGCATCA
TGAATTTCAGGTGTGGCCCAGAGTAAGAAGTGCTTTTTGACGGATGACTTCGAATAGACT
TCTGTTACTTTGGGGCTCACCTAAAAATTTTCAGATTGTATTGTTTAGAGAATTCTATAC
TCTTTTAATCATAAATATTTCACCATTGAATCCATGAAACTGAAATAGAAAATATGGCTT
ATTAGACTAATTAGCTAAAAATCTGCCCATTGGAAAGTGGAAGAGCTTTCTCTGAGTGCT
GAGTTTTTTAATTTAGTTTTCTGTTTGGAAAGGATATTAAGAGTTCAGATATCTTTCTTC
TCATGTAGCACGTTTGAAATACCATTATTTCTGGTTTTGTGGAAAGTGACATGAGCTGGA
GAGGGCAGAATGTGGCCTCTGCTAGCCATTCGCAGCTGTGACCTCCCAGCAGAGTCCACG
TCAGGGTGCTTGGATCACGCTGCGCCCTCTACCTAGCCAGCATAGCAGTATTACTCTGTA
GGTGTTGCACATCTGACTTTTGTTAATCATTTTTTAAAACTTTCTCAATTTGTTTATTTC
TCTTCAGAAAGAAGTGTTTTTAAACAGTGTATATGCTTTTTAAAGAAAAGTACTGTGGCT
GAGAACCCTGTGGATTTTTTATTATGTTGTCTGTCATAAATAAGCTAACATAGATCAGTT
GTAGGCTGTGTCTGCAGAGATATGCAGCTGGAAGTCAGAGCCCGACGTCACAACAGTCTT
GCCAAAGAGAGAGCCTGAGTGGAAGATGTGTTTGATATTTTTCAGCACTAAGCGTGAGGC
TGCTTGCACAGCGTAAGAATAGTGTTCAGATTTGTTGACTAGTCAGTATATAGATTCGTA
GCCTCTGACTGACTGAGAGTCTTAACGGTGTAGCAGAAGTCACCGTTGTTTTTCTGTCTT
CAGATTTGTCCGTTCAAAAGATGGCTCATTGCTTTTTAAGATGACTTTAGCATTCGAAGC
AAAGAGAAGACCAGTGAGAGACATGAACTAAAACAGCGTAGGTGAATTTTGATTTGTGAT
TCACCAAATGAGACTTAATAATAACTCAAGAAAAAAAAAAATGCTGCCAAAATATATTAA
ATATTTAGGTAGCTTATTAGTGGGAAGATGAAATACTTGTCCTTTTTAGGCCTATCCTTA
ATAAACTAGGAAATTGGTGACTCAAAAGTTTGAAATTTTCATCAATATGAAGCTCGTTTG
TTTCTTTCCTAGTCAAGAGGAACTCATTGGAAATGCCGTTATAATTTAAATTTGTTAGTT
TCTGATAAGTATAATGATTGGTATGCTACCAACCTGGTGTAATAGTATAATACCAGCCAA
AATACAATTTGAGACACATCTATCTCATTTAACCGTTTATTTGAACATGGAAGCTTATTT
TTCAGGCAAAAGAAACATAATAGTTTTTAAAAGTGTAACTGTAAGAATAACTGTATGATG
ACCTTGAAGAGCACTGTTTTTTATTTCATGCCCCCTCTGTGTTTGAGCTCTGCTTATTTT
TTTCAGAGGCATTATTTTTACTGTAAGCTCCAAAGTGTAAGAATTAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               75-288, - strand, RNAz p=0.910442
               

               
               483-600, + strand, RNAz p=0.888038

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-288, - strand, RNAz p=0.910442
               

               
               483-600, + strand, RNAz p=0.888038

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1728, gnl|bosTau2|chr16 (42592625-42594338)
               

               
               1-1728, gnl|Hg17|chr1 (175618425-175619971)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1728, gnl|bosTau2|chr16 (42592625-42594338)
               

               
               1-1728, gnl|Hg17|chr1 (175618425-175619971)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

Help | Less info


               
               ebs (0.236602)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	75-288, - strand, RNAz p=0.910442
	483-600, + strand, RNAz p=0.888038

	1-1728, gnl\|bosTau2\|chr16 (42592625-42594338)
	1-1728, gnl\|Hg17\|chr1 (175618425-175619971)

	ebs (0.236602)
	cut (0.169924)
	fco (0.157208)
	ova (0.129132)
	ret (0.128733)
	pgl (0.118483)
	spc (0.113366)
	cty (0.10408)