Non-Coding RNA Search

Ss1.1-Pig4-TMW8049G24.3

Sequence:


               
               CATCCCTTTGGAAGTAGCTGCAATGATAGGAGCAGCAGCACAGGAAGCCATCGCAGAAGC
GGACTGGGCTGAGGGTCTGGAGTTAGCCTGAAGACAGGTTGCAGTTTCCCGACCTCCACA
CCATCACCAGCTGAGACTGGATCTGAGGGCAGCAGGCTTTTATCAATCAGCTTGAGTTTG
TGTCACTTGATGAACGTGGTTTAAAAAAAAAAAAAAAAGTATTTAAAACAATGTGCAGTG
GTGCCAACTCCCCAGGGATACTGGTCCACCTGTGGAGCCCAGACACTGCCCACACCCACC
TATCTCTATCGCTGACCTCAGAACGGGACTAGGATTGAGCTGATCTGATTTGTTTTGCAT
AAAAGGACAGCCTTTTTACTGTTCTAAAGTTTTCACAGTCCTCAAATGTAAGTAAAAACT
CATTTCAGGTGGCTAGAAACAAGAGTATCGCTGGAAATAGAAACCCTGTAAGTTATGGAA
GAGCGTAAGAAATCCTGTAAATTACGAGACAGCCTTTCAGCTCTGTCCAAATTTAAACCG
GCCAATGGATTTTGAAAACATTGCACTAAAAGAGGTAATTATTGAAACATTAAAAAATAT
GTGTCCGTTCCAGCAGCAGGAGCTTTTCCCCTCTGCCTGGTAGTTCCTTAGTTGATGATA
TGCTGGGAGGTAAGCAGCTCTGCTCACTGGCTGAGGAGGAGGAGGCAGGGAGCAGCTCCT
TTGGAGAGGCAGAGTGTCAGGTTTCAGGCTACATTTCCTCCTCCTGAAAGCAGCAGAGCA
CGACAACCTGAGCAATGCCTGCCCTCTGCTTTATCCTGGGGGAAGGAAGCTTGCCCTTCC
AGAAGGGGGCCCTCAAGCATGGATTAGGTACCTCTTGGGAGGTGCTTTGAGCATCGTGAT
GTGCAAGGTACATAATGAGACCGTCCTTCCTGGCTTTCCCCACTTGAGTGGAAACCCAGC
CTCTCCTCCTGGACTCGGGAGGGGTGGGATAGCTCTTGCTTTAAGGGTTCTATTTGCAGA
ATGCAGGAGATTCATCAGCAACCCTTTTCCGGACATAGCTGCTCCCCTCTTCACCCACTT
CTGCTGAAAGATGCTCATCCAAAACATATTTAATTTTTGGAGATGGTCCTTACTCAGATT
TGAGTATTTCAGTGTCTCAACATGCTGATTTGGTGAGTGGAGCAGTCGTTTTTCTGAAGG
TCTCTTAGACCACACTCTACTCTGACTTCAGAAAGTAGCCTCTCAGACTCAAAGCTGAAA
GATGCTCATCCAAAACATATTTAATTTTTAGAGATGGTCCTTACTCAGATTTGAGTATTT
CAGTGTTTCAACATGCTGATTTGGTGGGTGAAGCAGTCATTTTTTCGAAGGTCTCTTAGA
CCACACTCTACTCTGACTTCAGAAAGTAGCCTCTCAGACTCAAAGGCCTTATCTCACCGC
TGGTACCTCAATTTATCACCCTATTTACAGTTTTTCTAACTCCAGGATAGTGTTAATGTT
TGGGATATATTTTTCCAAAAACTATTTTTAAATCGAATGCAGCTTCTAAAACTTGTAATC
TAGTGAAGACTGATACTGTAATAAGCTTGGTATTTTTGCAGAGTTTTTGGGAGACGTGTG
TTTCAGTTATTTTAAGATCCAGACCGTATCAATCATCTGTCTATTGACAGAGGTGTATAC
CCCCTAAACAATACATGGATTTATTTATATATGTCTTTGGATTGTTTATATATTCATGCA
CATATCTGGGCAAGAGTTTGGTGAATCTGAGCATGTCTGTGGGTGTGTGTGGTGAAAGGG
GAACGTTGCCACTTTCCCTTACTAGAAAATGGAAAGGAACAGATGGGATGTAGATGTAAA
AATAAAACTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCCTTTGGAAGTAGCTGCAATGATAGGAGCAGCAGCACAGGAAGCCATCGCAGAAGC
GGACTGGGCTGAGGGTCTGGAGTTAGCCTGAAGACAGGTTGCAGTTTCCCGACCTCCACA
CCATCACCAGCTGAGACTGGATCTGAGGGCAGCAGGCTTTTATCAATCAGCTTGAGTTTG
TGTCACTTGATGAACGTGGTTTAAAAAAAAAAAAAAAAGTATTTAAAACAATGTGCAGTG
GTGCCAACTCCCCAGGGATACTGGTCCACCTGTGGAGCCCAGACACTGCCCACACCCACC
TATCTCTATCGCTGACCTCAGAACGGGACTAGGATTGAGCTGATCTGATTTGTTTTGCAT
AAAAGGACAGCCTTTTTACTGTTCTAAAGTTTTCACAGTCCTCAAATGTAAGTAAAAACT
CATTTCAGGTGGCTAGAAACAAGAGTATCGCTGGAAATAGAAACCCTGTAAGTTATGGAA
GAGCGTAAGAAATCCTGTAAATTACGAGACAGCCTTTCAGCTCTGTCCAAATTTAAACCG
GCCAATGGATTTTGAAAACATTGCACTAAAAGAGGTAATTATTGAAACATTAAAAAATAT
GTGTCCGTTCCAGCAGCAGGAGCTTTTCCCCTCTGCCTGGTAGTTCCTTAGTTGATGATA
TGCTGGGAGGTAAGCAGCTCTGCTCACTGGCTGAGGAGGAGGAGGCAGGGAGCAGCTCCT
TTGGAGAGGCAGAGTGTCAGGTTTCAGGCTACATTTCCTCCTCCTGAAAGCAGCAGAGCA
CGACAACCTGAGCAATGCCTGCCCTCTGCTTTATCCTGGGGGAAGGAAGCTTGCCCTTCC
AGAAGGGGGCCCTCAAGCATGGATTAGGTACCTCTTGGGAGGTGCTTTGAGCATCGTGAT
GTGCAAGGTACATAATGAGACCGTCCTTCCTGGCTTTCCCCACTTGAGTGGAAACCCAGC
CTCTCCTCCTGGACTCGGGAGGGGTGGGATAGCTCTTGCTTTAAGGGTTCTATTTGCAGA
ATGCAGGAGATTCATCAGCAACCCTTTTCCGGACATAGCTGCTCCCCTCTTCACCCACTT
CTGCTGAAAGATGCTCATCCAAAACATATTTAATTTTTGGAGATGGTCCTTACTCAGATT
TGAGTATTTCAGTGTCTCAACATGCTGATTTGGTGAGTGGAGCAGTCGTTTTTCTGAAGG
TCTCTTAGACCACACTCTACTCTGACTTCAGAAAGTAGCCTCTCAGACTCAAAGCTGAAA
GATGCTCATCCAAAACATATTTAATTTTTAGAGATGGTCCTTACTCAGATTTGAGTATTT
CAGTGTTTCAACATGCTGATTTGGTGGGTGAAGCAGTCATTTTTTCGAAGGTCTCTTAGA
CCACACTCTACTCTGACTTCAGAAAGTAGCCTCTCAGACTCAAAGGCCTTATCTCACCGC
TGGTACCTCAATTTATCACCCTATTTACAGTTTTTCTAACTCCAGGATAGTGTTAATGTT
TGGGATATATTTTTCCAAAAACTATTTTTAAATCGAATGCAGCTTCTAAAACTTGTAATC
TAGTGAAGACTGATACTGTAATAAGCTTGGTATTTTTGCAGAGTTTTTGGGAGACGTGTG
TTTCAGTTATTTTAAGATCCAGACCGTATCAATCATCTGTCTATTGACAGAGGTGTATAC
CCCCTAAACAATACATGGATTTATTTATATATGTCTTTGGATTGTTTATATATTCATGCA
CATATCTGGGCAAGAGTTTGGTGAATCTGAGCATGTCTGTGGGTGTGTGTGGTGAAAGGG
GAACGTTGCCACTTTCCCTTACTAGAAAATGGAAAGGAACAGATGGGATGTAGATGTAAA
AATAAAACTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-626, gnl|bosTau2|chr3 (397449-398069)
               

               
               1-626, gnl|Hg17|chr1 (164405632-164406234)
               

               
               1-626, gnl|Mm7|chr1 (165620851-165620268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-626, gnl|bosTau2|chr3 (397449-398069)
               

               
               1-626, gnl|Hg17|chr1 (164405632-164406234)
               

               
               1-626, gnl|Mm7|chr1 (165620851-165620268)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               cbl (1.14797)
               

               
               lnt (0.426925)
               

               
               thg (0.380373)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               pla (0.267344)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.14797)
               

               
               lnt (0.426925)
               

               
               thg (0.380373)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               pla (0.267344)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lun (0.150489)
               

               
               ste (0.135208)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	1-626, gnl\|bosTau2\|chr3 (397449-398069)
	1-626, gnl\|Hg17\|chr1 (164405632-164406234)
	1-626, gnl\|Mm7\|chr1 (165620851-165620268)

	cbl (1.14797)
	lnt (0.426925)
	thg (0.380373)
	tbr (0.308356)
	bfe (0.299715)
	pla (0.267344)
	mas (0.210305)
	nlu (0.191681)
	mga (0.160205)
	cag (0.151194)
	lun (0.150489)
	ste (0.135208)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	cty (0.10408)