Non-Coding RNA Search

Ss1.1-Pig4-TMW8049H07.3

Sequence:


               
               ACTGCCAGGCGGGGGTGTCCCGCTCGGCCACCATCGTCATCGCTTACTTGATGAAACACA
CGCGGATGACCATGACTGATGCTTATAAATTTGTCAAAGGCAAACGGCCAATTATTTCCC
CGAACCTGAACTTCATGGGGCAGTTGCTGGAGTTTGAAGAAGACCTAAACAACGGCGTGA
CACCGCGGATCCTGACACCAAAGCTGATGGGCGTGGAGACGGTTGTGTGACAATTGTCTG
GCTGGACAGGATGACAGTTCTCCGCTAGGAGACGGAGAGGATGGATGCTTTCTTTTCTTT
TTTTCTTTTTTTAGCTGGGGGTAAAGTTTGTGAATGGAAACAAACTCATCTAAAAACTTG
TTATTTTTAACCCGTGTGAGAAGAATTTAACTTTTGACGCCATTGAGATTTACTTCCTGC
GAACCGACAGAGCAGGGAGGCTGAAGAAGTAATTTTTTAAGCCAACAATAAAAATGTCAT
AAAACTTGTTTCTTCCCCTTTTTCCTTTTAAGCGATTTGTAGAGTTTACAATTAACTAGT
CTGTGCAGGTTCATAGACCGAAGATGCTACACTTTAAGCCAATTAAAAAGAACCAAAAGT
AAGTAGAAAAGATGCTGAATCATGAAGGTCCAGGATCCGCCTGGGCTGTCCTTACAGAAA
GCAAGAACCCAACCAAACCAAGCCCTGTCGTGCTCACTGGTGCAAAGAGAAGCCCAGGGC
AGCTGAAGTGGTCTAAGAACGCTTCATGTTCTTTCAAGTGTCAAAGGATACTGTTGATTT
TGTGTGTTTCATACTTTGGATTACTTTTCACCCTTTCTGGGTTTAAGAGATTTTTTTTTT
TGGAAATGGCAAGGACCCGACCATTATAGCATATGCCTTCACTGGCTTCTTGTGCAATAA
TATGGTGTTTTGAGTGTGCAAATGAGTTAGAGTTGGCAGCTGAACAATAGATAAATAGTG
CAAAATTGCCAGCTTGGAGATAGAAATGAGTTAAACAAAACCAATTACTTTCTTTCCCAC
CTTTTTCCTTTGATTTTTTTCCCCTCTGATTTAATTCTGGTTACCGTGCCATAAACCTTG
TTACATATGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCCAGGCGGGGGTGTCCCGCTCGGCCACCATCGTCATCGCTTACTTGATGAAACACA
CGCGGATGACCATGACTGATGCTTATAAATTTGTCAAAGGCAAACGGCCAATTATTTCCC
CGAACCTGAACTTCATGGGGCAGTTGCTGGAGTTTGAAGAAGACCTAAACAACGGCGTGA
CACCGCGGATCCTGACACCAAAGCTGATGGGCGTGGAGACGGTTGTGTGACAATTGTCTG
GCTGGACAGGATGACAGTTCTCCGCTAGGAGACGGAGAGGATGGATGCTTTCTTTTCTTT
TTTTCTTTTTTTAGCTGGGGGTAAAGTTTGTGAATGGAAACAAACTCATCTAAAAACTTG
TTATTTTTAACCCGTGTGAGAAGAATTTAACTTTTGACGCCATTGAGATTTACTTCCTGC
GAACCGACAGAGCAGGGAGGCTGAAGAAGTAATTTTTTAAGCCAACAATAAAAATGTCAT
AAAACTTGTTTCTTCCCCTTTTTCCTTTTAAGCGATTTGTAGAGTTTACAATTAACTAGT
CTGTGCAGGTTCATAGACCGAAGATGCTACACTTTAAGCCAATTAAAAAGAACCAAAAGT
AAGTAGAAAAGATGCTGAATCATGAAGGTCCAGGATCCGCCTGGGCTGTCCTTACAGAAA
GCAAGAACCCAACCAAACCAAGCCCTGTCGTGCTCACTGGTGCAAAGAGAAGCCCAGGGC
AGCTGAAGTGGTCTAAGAACGCTTCATGTTCTTTCAAGTGTCAAAGGATACTGTTGATTT
TGTGTGTTTCATACTTTGGATTACTTTTCACCCTTTCTGGGTTTAAGAGATTTTTTTTTT
TGGAAATGGCAAGGACCCGACCATTATAGCATATGCCTTCACTGGCTTCTTGTGCAATAA
TATGGTGTTTTGAGTGTGCAAATGAGTTAGAGTTGGCAGCTGAACAATAGATAAATAGTG
CAAAATTGCCAGCTTGGAGATAGAAATGAGTTAAACAAAACCAATTACTTTCTTTCCCAC
CTTTTTCCTTTGATTTTTTTCCCCTCTGATTTAATTCTGGTTACCGTGCCATAAACCTTG
TTACATATGTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55962383|emb|CAI11672.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55962383|emb|CAI11672.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-289, + strand, RNAz p=0.514081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-289, + strand, RNAz p=0.514081

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007207, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007207, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr16 (12312110-12311007)
               

               
               1-1092, gnl|Hg17|chr1 (218264378-218263278)
               

               
               1-1092, gnl|Mm7|chr1 (183600322-183601515)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr16 (12312110-12311007)
               

               
               1-1092, gnl|Hg17|chr1 (218264378-218263278)
               

               
               1-1092, gnl|Mm7|chr1 (183600322-183601515)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ldo (0.38801)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ste (0.135208)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.38801)
               

               
               ese (0.253004)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               ste (0.135208)
               

               
               spc (0.113366)

	1-1092, gnl\|bosTau2\|chr16 (12312110-12311007)
	1-1092, gnl\|Hg17\|chr1 (218264378-218263278)
	1-1092, gnl\|Mm7\|chr1 (183600322-183601515)

	ldo (0.38801)
	ese (0.253004)
	tes (0.207814)
	hea (0.204499)
	sag (0.182715)
	ste (0.135208)
	spc (0.113366)