Non-Coding RNA Search

Ss1.1-Pig4-TMW8049H12.3

Sequence:


               
               TGGCTTCGCGAGTGGGTTAAGGATCCAGCATCACTGTGAGCTGTGGTGTAGGCTGGCAAC
TATAGCTCCAATTGACCCTTAGCCTGGGAACTTCCATATGCTGCAGGTACAGCCCTAAAA
AGCAAAAAAAAAAAAGATTAATCATCAAGAGAAGTTACACCTCTTTGACAATAGGTGCAT
GTGTGCATCCACCTGCTGTGATCTATGCTTTCCATGATATGAGATTAGGTGGGCTACTGA
CTTGTTTACCTTCTCGTCTCTTGTCCCAAAGATTTAAACTATGTACCTGGGCATAACACT
CCTGCCCAATTTTTACTTCTGAGATGACAGTATTTACTAAAATAAAAAAGAAATCTAGTT
AGCTTACTAACTTTTTTCCAAGTGATGAAAAGTTTTAAATAAATATTTAATAAGTGTAAA
CATACTAATAATTACTTCAAAAAATAAAATTACTTTTTCCTAGTGTGGCTCAGAGAATAC
ATTTGTATTAAAGCTTCATTGAAGGGGTTCTGATATCTTCTTTTTTCCTGACAGGTTATG
AAAGCATTATGACTTGTAACAGATTTTCATGTATATCATTGTCAAACAGGTTTAGAAGAC
AAACAAGTGTGTTTTGCTACATGCTGTATTTTAATCTGTTAATATTTTCCTATTGCTTTT
TTCTATAAATGCACATAATGAGTATTAAAAGAGATTGGTAAATAAAACAATTTTAGTAAC
TTTATGCGTGTAGATGAAACATTTGTGTCATGGAAATTAAAAACTAAGTACAAAAAATAA
AATTTTAAATGGTAAAAATGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTTCGCGAGTGGGTTAAGGATCCAGCATCACTGTGAGCTGTGGTGTAGGCTGGCAAC
TATAGCTCCAATTGACCCTTAGCCTGGGAACTTCCATATGCTGCAGGTACAGCCCTAAAA
AGCAAAAAAAAAAAAGATTAATCATCAAGAGAAGTTACACCTCTTTGACAATAGGTGCAT
GTGTGCATCCACCTGCTGTGATCTATGCTTTCCATGATATGAGATTAGGTGGGCTACTGA
CTTGTTTACCTTCTCGTCTCTTGTCCCAAAGATTTAAACTATGTACCTGGGCATAACACT
CCTGCCCAATTTTTACTTCTGAGATGACAGTATTTACTAAAATAAAAAAGAAATCTAGTT
AGCTTACTAACTTTTTTCCAAGTGATGAAAAGTTTTAAATAAATATTTAATAAGTGTAAA
CATACTAATAATTACTTCAAAAAATAAAATTACTTTTTCCTAGTGTGGCTCAGAGAATAC
ATTTGTATTAAAGCTTCATTGAAGGGGTTCTGATATCTTCTTTTTTCCTGACAGGTTATG
AAAGCATTATGACTTGTAACAGATTTTCATGTATATCATTGTCAAACAGGTTTAGAAGAC
AAACAAGTGTGTTTTGCTACATGCTGTATTTTAATCTGTTAATATTTTCCTATTGCTTTT
TTCTATAAATGCACATAATGAGTATTAAAAGAGATTGGTAAATAAAACAATTTTAGTAAC
TTTATGCGTGTAGATGAAACATTTGTGTCATGGAAATTAAAAACTAAGTACAAAAAATAA
AATTTTAAATGGTAAAAATGCAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               297-593, gnl|bosTau2|chr3 (23947216-23947519)
               

               
               297-593, gnl|Hg17|chr12 (95849408-95849721)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               297-593, gnl|bosTau2|chr3 (23947216-23947519)
               

               
               297-593, gnl|Hg17|chr12 (95849408-95849721)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	297-593, gnl\|bosTau2\|chr3 (23947216-23947519)
	297-593, gnl\|Hg17\|chr12 (95849408-95849721)

	fce (0.271592)
	pgl (0.236967)
	isp (0.150376)
	fat (0.147427)
	lin (0.145603)
	csk (0.140746)
	lyg (0.133103)
	ret (0.128733)
	sug (0.127291)
	jej (0.0989218)