Non-Coding RNA Search

Ss1.1-Pig4-TMW8049H18.5

Sequence:


               
               GATTCTGGGAAGGCTGTCCATCCCTTCGCCTGTCAGTGTTTGGAAACCCAGTTTTGTTCG
GTCCCGATGGGGGGAAAATTGAATGACGTTCTCTCCCTTTTTTGTTTAGGAAGACGTGGT
ACTAGTGTGGTGTGTTTGCTTGGAAATCCCGTGCCCACAGTCGTGTGTCCATCTGAGTCC
ACCTCAGAGCGTGGCGTCTTCAGGCCCCTCCTTAGTGAACACAGGTTCTAGCATCGTCTT
GTACTGTCCCCCCCGTTCTGACGCCACGGGCTCCATGGTTCTCTGAGTGGCTCCCCTGCA
CCCCCGTAGCTGTTCTAGGATAGTTGATGCATGTTACGAAGTTACGTATGCGCGTCTGTG
AGTGCGTCCGATGGAACGTGGCCGAGGACCCGTGTAGACACGAAGCCCTGACCTCAGGCC
CTCGGGGGCAGCTCCAAAACTCTACAGCAAAGATGTGTCCTCATCGCCCCGCCCCGCCTC
CCGCACCCAGCCACCCACCCACCCTCGGGAGAAGGAGGCGCACCCCCCGCACCCCTGCTA
AGATGCTCAGTGGCTTCTGCCAGGCGGGGGAGCCGTGCGCTGCCTGCAGAGAAGAGTCAC
TCGTCCCGTGTCAGGAACCCTGGTCTCCGTGGCACTTGTAACTCGCCATGACGTGTTTCT
GGTCTGTGTGTGTCCTTCCAGCCAGCTCCGGACTGCAGGCCGGGCTGGGTTCACATGCAG
AAAGGGGTTCCCCCCACCCCCAGGGCTGACCACAGTGGGGCGACGGCCACTCCCGGTGCC
GGTGTCCTGGTCCCTCGGAGGCGGTTGACGGGGCAGTCAGATTTTTAAAGTTTTGTACAT
AGTTTTCCTTTGTAATCACCCCCATTTTTACTTAACAACTGACTTCTTGTGGCTCTTATT
TCTGAATTCAAAGCTTGTGAAAAAAAATAATAAAGAACATACATGGCCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCTGGGAAGGCTGTCCATCCCTTCGCCTGTCAGTGTTTGGAAACCCAGTTTTGTTCG
GTCCCGATGGGGGGAAAATTGAATGACGTTCTCTCCCTTTTTTGTTTAGGAAGACGTGGT
ACTAGTGTGGTGTGTTTGCTTGGAAATCCCGTGCCCACAGTCGTGTGTCCATCTGAGTCC
ACCTCAGAGCGTGGCGTCTTCAGGCCCCTCCTTAGTGAACACAGGTTCTAGCATCGTCTT
GTACTGTCCCCCCCGTTCTGACGCCACGGGCTCCATGGTTCTCTGAGTGGCTCCCCTGCA
CCCCCGTAGCTGTTCTAGGATAGTTGATGCATGTTACGAAGTTACGTATGCGCGTCTGTG
AGTGCGTCCGATGGAACGTGGCCGAGGACCCGTGTAGACACGAAGCCCTGACCTCAGGCC
CTCGGGGGCAGCTCCAAAACTCTACAGCAAAGATGTGTCCTCATCGCCCCGCCCCGCCTC
CCGCACCCAGCCACCCACCCACCCTCGGGAGAAGGAGGCGCACCCCCCGCACCCCTGCTA
AGATGCTCAGTGGCTTCTGCCAGGCGGGGGAGCCGTGCGCTGCCTGCAGAGAAGAGTCAC
TCGTCCCGTGTCAGGAACCCTGGTCTCCGTGGCACTTGTAACTCGCCATGACGTGTTTCT
GGTCTGTGTGTGTCCTTCCAGCCAGCTCCGGACTGCAGGCCGGGCTGGGTTCACATGCAG
AAAGGGGTTCCCCCCACCCCCAGGGCTGACCACAGTGGGGCGACGGCCACTCCCGGTGCC
GGTGTCCTGGTCCCTCGGAGGCGGTTGACGGGGCAGTCAGATTTTTAAAGTTTTGTACAT
AGTTTTCCTTTGTAATCACCCCCATTTTTACTTAACAACTGACTTCTTGTGGCTCTTATT
TCTGAATTCAAAGCTTGTGAAAAAAAATAATAAAGAACATACATGGCCCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-485, gnl|bosTau2|chr6 (60580623-60581130)
               

               
               1-485, gnl|Hg17|chr4 (5941528-5941004)
               

               
               1-485, gnl|Mm7|chr5 (36372634-36373120)
               


               
               517-934, gnl|bosTau2|chr6 (60581110-60581532)
               

               
               517-934, gnl|Hg17|chr4 (5941049-5940597)
               

               
               517-934, gnl|Mm7|chr5 (36373091-36373516)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-485, gnl|bosTau2|chr6 (60580623-60581130)
               

               
               1-485, gnl|Hg17|chr4 (5941528-5941004)
               

               
               1-485, gnl|Mm7|chr5 (36372634-36373120)
               


               
               517-934, gnl|bosTau2|chr6 (60581110-60581532)
               

               
               517-934, gnl|Hg17|chr4 (5941049-5940597)
               

               
               517-934, gnl|Mm7|chr5 (36373091-36373516)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               ecc (1.15035)
               

               
               ebs (0.591506)
               

               
               eye (0.511509)
               

               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (1.15035)
               

               
               ebs (0.591506)
               

               
               eye (0.511509)
               

               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               jej (0.0989218)

	1-485, gnl\|bosTau2\|chr6 (60580623-60581130)
	1-485, gnl\|Hg17\|chr4 (5941528-5941004)
	1-485, gnl\|Mm7\|chr5 (36372634-36373120)

	517-934, gnl\|bosTau2\|chr6 (60581110-60581532)
	517-934, gnl\|Hg17\|chr4 (5941049-5940597)
	517-934, gnl\|Mm7\|chr5 (36373091-36373516)

	ecc (1.15035)
	ebs (0.591506)
	eye (0.511509)
	fce (0.271592)
	fbs (0.175346)
	fhi (0.169578)
	jej (0.0989218)