Non-Coding RNA Search

Ss1.1-Pig4-TMW8049H23.3

Sequence:


               
               GTCTTCTGGCACTGATGCTCCACCTCTTCACACTCATCGAGGAAAGAAGCAGATACAAGG
GAGTCAGTCTTCCTGCCTCAGGGACCTCAGCCCAGCTCCTCCTGTCCTGCATCCCCGGCT
GCTGCTCAATCAGGAGAAAAGCAAAGCACCTGCTGAGACAGAAGCCCTCCTGGAAATCCC
TCCGTGTTCCTCCTCTCTGCCTCCATCCCTTCCTCACAGGCTCAAACTTGGGAAGCCGAG
GCAGACCCCAGAAGAGGGTGTACGAGTGGACATTCCAAATGCCTGCTTCCCACGGTCCCT
CTCCCACTGCTCTGGGGTCAGCGGTGACCTGCTCACATGAGCACAGTGTCTACCTGCCGC
CACCGGCCCTCAAACATGTGGCCCTGTTGTTCTTGGGCCATGTGGTGCCTTGTGCACCAG
AAGGGCACAGACCTGGACCTAAATGCCAGCTTTCCCGTCACATTTTATCAGATTACTTAG
TCCCTTTAAAGCCTCCACTTTCTTCCTTTACGAAACACGGATAGTGGCAACTGCCTTGTG
TGGATGACTGATCACCACAGAGCCAGAGCAGAGGAAATGCTGCTCATGACCAGGGAGCTA
CCGACTGTGTCCTTAGGGGCACCGAGGGTCAGACACAGTAACCCTCCATATGGGGACCAA
AATACTCAATCAGAAATGTAGGAGGTTCAAGAAAAAGAATATTGGCGGCACTGTCAGAAA
AAAACCCCCACAAAAGTGATGACAGCGTCGATTACACTGTAAACAAATCTCAAATGCAGA
GGCAATTGATTTCTAACCCTCCCCACACCCAACTCCAAACAGGAACACAGCCTGGGGGCA
GAGGGCTGGAGCCAGTCACATCCCATACAAATGTGCACACTCACTCAGCCCACTGCCAAA
GGATTCTGCTCTAATTAGTTAATAGTTTAGGAATTACCTTCCATCAATTCAGCTAAGAAA
GGAATGGATTCTGGTAACAAGACGATGTAATTCTCTCTCAGTTTTTCAGCCAGTGCTAAC
ACTGTAATCAGAGCAGCAAATCGAACCTGAAGGGATAAAAAAAGGTAAAGAACTGATTAA
CAAAAAAACCTAGTACTGCTATATTTAGTATTTTATGACCTTGAGATGAGCTCTGCATTT
TAAAGTTATTTCACATTTGTGTATTTCATTTCCTGTCCATTCAACTTTAATCTTAAAGAC
ACAGGTTTCTTACTGTGATCCAGTACTGCAAGCTTTTAATGTGAATGTCTTTTAATAACA
TTTTCCTTAAAATGCCACATACAAACCCAAATATGTTATCAAATGTGACTGCACTGGAGC
CCCAGGCAGCCCAACTGGCCACAACGCTGACCTGGCGGGAGCATGTCCCCAGCACCGCAG
GCAGGTCTCCTGCCCTCAGAACCCTGACTTCGGTCCCCACTGTGCTTGCATGAAGGGCCA
GGCGCCAGCTCTGCCACACTCTCACTTTAGCACTAACTAAAAACATTTGCCGTCTCATAA
TGTCCTAGTTCGGGAATTTAAAAAAAACTGGGATGTTGGTCACATGACTTGTCTGTGACA
GAGAATGCAGGCAACTGTTCCGTACTGTCATTCACTTCGAAACAAAAGTTAATGCTAGTC
CTCTTTCTGGTTTAGAGTAATTTAAAGAATATCTGGATATAGCAGAGTCTCTTACTGCCT
ATGTTCAATCAGGATTTTCTTGACATTGTTGAAGCAAAAAAACTTAAAGCTGCGATTTTG
TAAGAACCTGCAAATTTAAAATCTGGGGGTTCATCAAAACAGGCTCATTGTTCTCATTTC
CTAGTAAATAAATATGAATTTCAACTAATAAATTTATTAATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTCTGGCACTGATGCTCCACCTCTTCACACTCATCGAGGAAAGAAGCAGATACAAGG
GAGTCAGTCTTCCTGCCTCAGGGACCTCAGCCCAGCTCCTCCTGTCCTGCATCCCCGGCT
GCTGCTCAATCAGGAGAAAAGCAAAGCACCTGCTGAGACAGAAGCCCTCCTGGAAATCCC
TCCGTGTTCCTCCTCTCTGCCTCCATCCCTTCCTCACAGGCTCAAACTTGGGAAGCCGAG
GCAGACCCCAGAAGAGGGTGTACGAGTGGACATTCCAAATGCCTGCTTCCCACGGTCCCT
CTCCCACTGCTCTGGGGTCAGCGGTGACCTGCTCACATGAGCACAGTGTCTACCTGCCGC
CACCGGCCCTCAAACATGTGGCCCTGTTGTTCTTGGGCCATGTGGTGCCTTGTGCACCAG
AAGGGCACAGACCTGGACCTAAATGCCAGCTTTCCCGTCACATTTTATCAGATTACTTAG
TCCCTTTAAAGCCTCCACTTTCTTCCTTTACGAAACACGGATAGTGGCAACTGCCTTGTG
TGGATGACTGATCACCACAGAGCCAGAGCAGAGGAAATGCTGCTCATGACCAGGGAGCTA
CCGACTGTGTCCTTAGGGGCACCGAGGGTCAGACACAGTAACCCTCCATATGGGGACCAA
AATACTCAATCAGAAATGTAGGAGGTTCAAGAAAAAGAATATTGGCGGCACTGTCAGAAA
AAAACCCCCACAAAAGTGATGACAGCGTCGATTACACTGTAAACAAATCTCAAATGCAGA
GGCAATTGATTTCTAACCCTCCCCACACCCAACTCCAAACAGGAACACAGCCTGGGGGCA
GAGGGCTGGAGCCAGTCACATCCCATACAAATGTGCACACTCACTCAGCCCACTGCCAAA
GGATTCTGCTCTAATTAGTTAATAGTTTAGGAATTACCTTCCATCAATTCAGCTAAGAAA
GGAATGGATTCTGGTAACAAGACGATGTAATTCTCTCTCAGTTTTTCAGCCAGTGCTAAC
ACTGTAATCAGAGCAGCAAATCGAACCTGAAGGGATAAAAAAAGGTAAAGAACTGATTAA
CAAAAAAACCTAGTACTGCTATATTTAGTATTTTATGACCTTGAGATGAGCTCTGCATTT
TAAAGTTATTTCACATTTGTGTATTTCATTTCCTGTCCATTCAACTTTAATCTTAAAGAC
ACAGGTTTCTTACTGTGATCCAGTACTGCAAGCTTTTAATGTGAATGTCTTTTAATAACA
TTTTCCTTAAAATGCCACATACAAACCCAAATATGTTATCAAATGTGACTGCACTGGAGC
CCCAGGCAGCCCAACTGGCCACAACGCTGACCTGGCGGGAGCATGTCCCCAGCACCGCAG
GCAGGTCTCCTGCCCTCAGAACCCTGACTTCGGTCCCCACTGTGCTTGCATGAAGGGCCA
GGCGCCAGCTCTGCCACACTCTCACTTTAGCACTAACTAAAAACATTTGCCGTCTCATAA
TGTCCTAGTTCGGGAATTTAAAAAAAACTGGGATGTTGGTCACATGACTTGTCTGTGACA
GAGAATGCAGGCAACTGTTCCGTACTGTCATTCACTTCGAAACAAAAGTTAATGCTAGTC
CTCTTTCTGGTTTAGAGTAATTTAAAGAATATCTGGATATAGCAGAGTCTCTTACTGCCT
ATGTTCAATCAGGATTTTCTTGACATTGTTGAAGCAAAAAAACTTAAAGCTGCGATTTTG
TAAGAACCTGCAAATTTAAAATCTGGGGGTTCATCAAAACAGGCTCATTGTTCTCATTTC
CTAGTAAATAAATATGAATTTCAACTAATAAATTTATTAATAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-284, gnl|bosTau2|chr11 (62908957-62909234)
               

               
               1-284, gnl|Hg17|chr1 (233040295-233040578)
               


               
               418-1154, gnl|bosTau2|chr11 (62909424-62910180)
               

               
               418-1154, gnl|Hg17|chr1 (233040744-233041556)
               


               
               1234-1608, gnl|bosTau2|chr11 (62910317-62910667)
               

               
               1234-1608, gnl|Hg17|chr1 (233041708-233042052)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-284, gnl|bosTau2|chr11 (62908957-62909234)
               

               
               1-284, gnl|Hg17|chr1 (233040295-233040578)
               


               
               418-1154, gnl|bosTau2|chr11 (62909424-62910180)
               

               
               418-1154, gnl|Hg17|chr1 (233040744-233041556)
               


               
               1234-1608, gnl|bosTau2|chr11 (62910317-62910667)
               

               
               1234-1608, gnl|Hg17|chr1 (233041708-233042052)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               sag (0.36543)
               

               
               lin (0.291206)
               

               
               cbl (0.229595)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               lin (0.291206)
               

               
               cbl (0.229595)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               tra (0.123092)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-284, gnl\|bosTau2\|chr11 (62908957-62909234)
	1-284, gnl\|Hg17\|chr1 (233040295-233040578)

	418-1154, gnl\|bosTau2\|chr11 (62909424-62910180)
	418-1154, gnl\|Hg17\|chr1 (233040744-233041556)

	1234-1608, gnl\|bosTau2\|chr11 (62910317-62910667)
	1234-1608, gnl\|Hg17\|chr1 (233041708-233042052)

	sag (0.36543)
	lin (0.291206)
	cbl (0.229595)
	cmu (0.186393)
	gul (0.177588)
	sin (0.174948)
	rec (0.17307)
	isp (0.150376)
	spl (0.143184)
	che (0.136314)
	tra (0.123092)
	nbm (0.0993246)
	eje (0.0988338)