Non-Coding RNA Search

Ss1.1-Pig4-TMW8049I03.3

Sequence:


               
               GTCTCTCTAACTCTCTTAGCGAGTGCGGACTGTTCGCCTCCAACTCTGAAAGCCTTCGTT
GGCCCCGGCTTCCCTGGAGGCCTTGGGTGGGATGAGTACGGCACTCAGCGGAGGGGTGCG
GACGCTGCGGGTGCCCGGCCGCCACGGCTACGCAGCAGAGTTTTCCCCATATCTGCCGGG
CCGCCTGGCCTGCGCCGCCGCGCAGCACTACGGCATCGCGGGCTGTGGAACCCTGCTAAT
ATTGGATCATAATGAATCTGGCCTTAGGATTTTTAGAAGCTTTGACTGGACTGATGCTTT
GTTTGACGTGACCTGGAGTGAGAACAATGAGCATGTGCTGGTCACCTGCAGCGGCGATGG
CTCCTTGCAGCTCTGGGACACCGCTGGAGCCGCGGGGCCTCTGCAGGTCTACAAGGAGCA
CACTCAGGAGGTGTACAGTGTTGATTGGAGTCAAACCAGAGGTGAACAGCTTGTGGTGTC
TGGCTCATGGGATCAAACTGTCAAACTGTGGGACCCAACTGTTGGAAGGTCTCTGTGCAC
CTTTAAAGGCCATGAAAGTATCATTTATAGTACAATCTGGTCTCCCCACATCCCTGGTTG
CTTTGCTTCAGCCTCAGGTGATCAGACTCTGAGAATTTGGGATGTGAAGACAACAGGAGT
CAGAATTGTGGTTCCAGCACATCAGGCAGAAATTTTGAGTTGTGACTGGTGTAAATACAA
TGAGAATTTGTTGGTGACAGGGGCAGTTGATTGTAGTTTGAGAGGCTGGGACTTGAGAAA
TGTACGACAACCAGTATTTGAACTTCTTGGTCACACGTATGCTATTAGGAGAGTGAAATT
TTCACCATTTTATGCTTCCGTGCTGGCTTCTTGCTCCTATGACTTTACTGTAAGATTCTG
GAACTTTTCAAAGCCTAACCCTCTTCTTGAAACAGTGGAACATCATACAGAATTTACTTG
TGGTTTAGACTTAAGTCTTCAGAGCCCTACTCAGGTGGCTGACTGTGCTTGGGATGAAAC
AATAAAGATATATGATCCTGTTTGTCTTACCATGCCTGCTTGAGATAAACTGCTCCATTC
AGAAACAAAGGATATTGGCCAAAGAACTGCTTAACAGGAAATAAATTATTGATATCGTAG
ATTTTATGCTTTTATATACAATTGAGATTTCAAATCTTAAAATTTATTCTGGAATCAGTT
TTGAGGCAGCTGATAAAGACTTTGGTCACTTCTTAAGCCTGGTACAGAAGCCATATTTCT
TAAAATTCTAAGGAATAAATGATCTTATGGTATATCTTATATATATCTATTAAAATGTAA
CCTCTCTATTATAAAATGGATTAAAATATGAGAGATCTGTAGATTATATTGAAAGTGACA
TATTTCATTTTTAATTTGTCATTTTTGTTGTAAAATATAATCACTGCTGTTGGTAAAAAT
CACAATAAACTGGTATCTCTTCTTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCTCTAACTCTCTTAGCGAGTGCGGACTGTTCGCCTCCAACTCTGAAAGCCTTCGTT
GGCCCCGGCTTCCCTGGAGGCCTTGGGTGGGATGAGTACGGCACTCAGCGGAGGGGTGCG
GACGCTGCGGGTGCCCGGCCGCCACGGCTACGCAGCAGAGTTTTCCCCATATCTGCCGGG
CCGCCTGGCCTGCGCCGCCGCGCAGCACTACGGCATCGCGGGCTGTGGAACCCTGCTAAT
ATTGGATCATAATGAATCTGGCCTTAGGATTTTTAGAAGCTTTGACTGGACTGATGCTTT
GTTTGACGTGACCTGGAGTGAGAACAATGAGCATGTGCTGGTCACCTGCAGCGGCGATGG
CTCCTTGCAGCTCTGGGACACCGCTGGAGCCGCGGGGCCTCTGCAGGTCTACAAGGAGCA
CACTCAGGAGGTGTACAGTGTTGATTGGAGTCAAACCAGAGGTGAACAGCTTGTGGTGTC
TGGCTCATGGGATCAAACTGTCAAACTGTGGGACCCAACTGTTGGAAGGTCTCTGTGCAC
CTTTAAAGGCCATGAAAGTATCATTTATAGTACAATCTGGTCTCCCCACATCCCTGGTTG
CTTTGCTTCAGCCTCAGGTGATCAGACTCTGAGAATTTGGGATGTGAAGACAACAGGAGT
CAGAATTGTGGTTCCAGCACATCAGGCAGAAATTTTGAGTTGTGACTGGTGTAAATACAA
TGAGAATTTGTTGGTGACAGGGGCAGTTGATTGTAGTTTGAGAGGCTGGGACTTGAGAAA
TGTACGACAACCAGTATTTGAACTTCTTGGTCACACGTATGCTATTAGGAGAGTGAAATT
TTCACCATTTTATGCTTCCGTGCTGGCTTCTTGCTCCTATGACTTTACTGTAAGATTCTG
GAACTTTTCAAAGCCTAACCCTCTTCTTGAAACAGTGGAACATCATACAGAATTTACTTG
TGGTTTAGACTTAAGTCTTCAGAGCCCTACTCAGGTGGCTGACTGTGCTTGGGATGAAAC
AATAAAGATATATGATCCTGTTTGTCTTACCATGCCTGCTTGAGATAAACTGCTCCATTC
AGAAACAAAGGATATTGGCCAAAGAACTGCTTAACAGGAAATAAATTATTGATATCGTAG
ATTTTATGCTTTTATATACAATTGAGATTTCAAATCTTAAAATTTATTCTGGAATCAGTT
TTGAGGCAGCTGATAAAGACTTTGGTCACTTCTTAAGCCTGGTACAGAAGCCATATTTCT
TAAAATTCTAAGGAATAAATGATCTTATGGTATATCTTATATATATCTATTAAAATGTAA
CCTCTCTATTATAAAATGGATTAAAATATGAGAGATCTGTAGATTATATTGAAAGTGACA
TATTTCATTTTTAATTTGTCATTTTTGTTGTAAAATATAATCACTGCTGTTGGTAAAAAT
CACAATAAACTGGTATCTCTTCTTGAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6679283|ref|NP_032848.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6679283|ref|NP_032848.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               76-283, gnl|bosTau2|chr5 (38408969-38409176)
               

               
               76-283, gnl|Hg17|chr6 (137185481-137188102)
               

               
               76-283, gnl|Mm7|chr10 (19632325-19630577)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-283, gnl|bosTau2|chr5 (38408969-38409176)
               

               
               76-283, gnl|Hg17|chr6 (137185481-137188102)
               

               
               76-283, gnl|Mm7|chr10 (19632325-19630577)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               elu (0.385356)
               

               
               tbr (0.308356)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               tbr (0.308356)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	76-283, gnl\|bosTau2\|chr5 (38408969-38409176)
	76-283, gnl\|Hg17\|chr6 (137185481-137188102)
	76-283, gnl\|Mm7\|chr10 (19632325-19630577)

	elu (0.385356)
	tbr (0.308356)
	cty (0.20816)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	nje (0.16592)
	mga (0.160205)
	ski (0.146735)
	liv (0.146284)
	csk (0.140746)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	tra (0.123092)
	cly (0.120642)
	pgl (0.118483)
	eje (0.0988338)