Ss1.1-Pig4-TMW8049I05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTATCCAAGGAGTGTAAGCGCTGAACTGCTCGCAGTGGGGACCTGTGGCTTGATAACA CTTTTTTTGGTTATTCCTGAAGTGTCTTTCGTCTGACTTGATCCCAGTCTTGTCACCGGC CCAGCATGGCTTGCGGTCACACTGTGTTGATGCGGTTGGTGGCCTCAGCGTATGCTGTGG CCCAGAAGGCCGGGATGATCGTCAGGCGAGTTATTGCCGAAGGAGACCTGGGTATCGTGG AGAAGACCTGTGCGACGGACCTGCAGACCAAGGCCGACCGATTAGTTCAGATGAGCATAT GTTCTTCCCTGGCACGGAAGTTCCCCAAACTGACAATTATAGGGGAAGAGGATCTGCCTC CTGAAGAAGTGGATCAGGAGCTGATTGAAGATGGCCAGTGGGAGGAGATCCTGAAGCAGC CCTGCCCGTCACAGTACAGCGCCATCAAGGAGGAGGATCTTGTCGTCTGGGTTGATCCAC TGGATGGTACCAAAGAATATACTGAAGGTCTTCTTGACAATGTAACGGTTCTTATTGGAA TTGCTTATGAAGGAAAAGCCATAGCAGGAGTTATTAACCAGCCATATTACAACTACCAGG CAGGACCAGATGCTGTGTTGGGGAGAACCATCTGGGGAGTTTTAGGTTTAGGTGCCTTTG GGTTCCAGCTGAAAGAAGTGCCTGCCGGGAAACACATTATCACAACCACCCGGTCCCACA GCAACCAGCTGGTTATGGACTGTGTGACGGCTATGAATCCTGATGATGTGCTTCGAGTGG GAGGAGCAGGAAATAAGATTATCCAGCTGATCGAAGGCAAAGCCTCTGCTTACGTATTTG CAAGTCCTGGATGTAAGAAGTGGGATACCTGTGCTCCTGAAGTTATTTTACATGCTGTGG GAGGCAAGTTAACCGACATCCATGGAAATGCCCTTCAGTATAACAAGGAAGTGAAGCACA TGAACTCGGCGGGAGTCCTGGCCACGCTGAGGAATTACGACTACTATGCAAGTCGAGTTC CCCAGTCTGTCAAAAATGCACTTGTGCCTTGAAGGGAAATCAAGGACTTGCATCTCGAGA GAGCGCATTTTACACCTAACTGAATGACACCAGAGCTCCACTCCCCGTTGATGACTGTTC TATCCAGTTACTTAGGAGTAGAAAGAGAATTTTAAAATGTCTTAATTAATTAATCATCCA GACCAATTTTGATATCGGGAAAATGTATAAAGTTAGTATATGTCACATTTCTTTCTCTCC ATTTATTTGGAGAAATGAAAGTTTAGCTCCAACTGGCTAGCCCGGTCACTTGCCCAATCT ACATTCCTGTTTTGTAAACAAGATTTCTGTAGCACAAGTTGTCACCTGAATCTCCTCCTC GTTTTTCACAGTAAAGTAAGACATTTTCCTACTCTCATTCTGAGTACATTAAAATATTAT ATATGTTGATGAAACATTTTGGAGAAAAGTTTCTTTATAATAAATTATTTAATTCTGAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTATCCAAGGAGTGTAAGCGCTGAACTGCTCGCAGTGGGGACCTGTGGCTTGATAACA CTTTTTTTGGTTATTCCTGAAGTGTCTTTCGTCTGACTTGATCCCAGTCTTGTCACCGGC CCAGCATGGCTTGCGGTCACACTGTGTTGATGCGGTTGGTGGCCTCAGCGTATGCTGTGG CCCAGAAGGCCGGGATGATCGTCAGGCGAGTTATTGCCGAAGGAGACCTGGGTATCGTGG AGAAGACCTGTGCGACGGACCTGCAGACCAAGGCCGACCGATTAGTTCAGATGAGCATAT GTTCTTCCCTGGCACGGAAGTTCCCCAAACTGACAATTATAGGGGAAGAGGATCTGCCTC CTGAAGAAGTGGATCAGGAGCTGATTGAAGATGGCCAGTGGGAGGAGATCCTGAAGCAGC CCTGCCCGTCACAGTACAGCGCCATCAAGGAGGAGGATCTTGTCGTCTGGGTTGATCCAC TGGATGGTACCAAAGAATATACTGAAGGTCTTCTTGACAATGTAACGGTTCTTATTGGAA TTGCTTATGAAGGAAAAGCCATAGCAGGAGTTATTAACCAGCCATATTACAACTACCAGG CAGGACCAGATGCTGTGTTGGGGAGAACCATCTGGGGAGTTTTAGGTTTAGGTGCCTTTG GGTTCCAGCTGAAAGAAGTGCCTGCCGGGAAACACATTATCACAACCACCCGGTCCCACA GCAACCAGCTGGTTATGGACTGTGTGACGGCTATGAATCCTGATGATGTGCTTCGAGTGG GAGGAGCAGGAAATAAGATTATCCAGCTGATCGAAGGCAAAGCCTCTGCTTACGTATTTG CAAGTCCTGGATGTAAGAAGTGGGATACCTGTGCTCCTGAAGTTATTTTACATGCTGTGG GAGGCAAGTTAACCGACATCCATGGAAATGCCCTTCAGTATAACAAGGAAGTGAAGCACA TGAACTCGGCGGGAGTCCTGGCCACGCTGAGGAATTACGACTACTATGCAAGTCGAGTTC CCCAGTCTGTCAAAAATGCACTTGTGCCTTGAAGGGAAATCAAGGACTTGCATCTCGAGA GAGCGCATTTTACACCTAACTGAATGACACCAGAGCTCCACTCCCCGTTGATGACTGTTC TATCCAGTTACTTAGGAGTAGAAAGAGAATTTTAAAATGTCTTAATTAATTAATCATCCA GACCAATTTTGATATCGGGAAAATGTATAAAGTTAGTATATGTCACATTTCTTTCTCTCC ATTTATTTGGAGAAATGAAAGTTTAGCTCCAACTGGCTAGCCCGGTCACTTGCCCAATCT ACATTCCTGTTTTGTAAACAAGATTTCTGTAGCACAAGTTGTCACCTGAATCTCCTCCTC GTTTTTCACAGTAAAGTAAGACATTTTCCTACTCTCATTCTGAGTACATTAAAATATTAT ATATGTTGATGAAACATTTTGGAGAAAAGTTTCTTTATAATAAATTATTTAATTCTGAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 118-245, gnl|bosTau2|chr16 (11457137-11457264) | |
| 118-245, gnl|canFam2|chr38 (17851103-17851259) | |
| 118-245, gnl|danRer3|chr20 (8995038-8994887) | |
| 118-245, gnl|dasNov1|scaffold_39072 (557-401) | |
| 118-245, gnl|galGal2|chr3 (15146828-15146671) | |
| 118-245, gnl|hg17|chr1 (216641456-216641613) | |
| 118-245, gnl|Hg17|chr1 (216641591-216641464) | |
| 118-245, gnl|loxAfr1|scaffold_641 (16765-16920) | |
| 118-245, gnl|mm7|chr1 (184863821-184863667) | |
| 118-245, gnl|Mm7|chr1 (184863684-184863811) | |
| 118-245, gnl|monDom2|scaffold_13 (26189988-26190148) | |
| 118-245, gnl|oryCun1|scaffold_195699 (4714-4601) | |
| 118-245, gnl|panTro1|chr1 (200365721-200365878) | |
| 118-245, gnl|rn3|chr6 (67972051-67972180) | |
| 118-245, gnl|tetNig1|chr14 (4253430-4253552) | |
| 349-458, gnl|bosTau2|chr16 (11461220-11461329) | |
| 349-458, gnl|canFam2|chr38 (17845628-17845753) | |
| 349-458, gnl|danRer3|chr20 (8997728-8997616) | |
| 349-458, gnl|dasNov1|scaffold_39072 (4213-4089) | |
| 349-458, gnl|echTel1|scaffold_319634 (472-347) | |
| 349-458, gnl|fr1|chrUn (80615430-80615336) | |
| 349-458, gnl|galGal2|chr3 (15149453-15149321) | |
| 349-458, gnl|hg17|chr1 (216634574-216634699) | |
| 349-458, gnl|Hg17|chr1 (216634696-216634587) | |
| 349-458, gnl|mm7|chr1 (184871016-184870891) | |
| 349-458, gnl|Mm7|chr1 (184870892-184871001) | |
| 349-458, gnl|monDom2|scaffold_13 (26179110-26179235) | |
| 349-458, gnl|oryCun1|scaffold_172551 (16258-16383) | |
| 349-458, gnl|panTro1|chr1 (200359334-200359459) | |
| 349-458, gnl|rn3|chr13 (101544135-101544010) | |
| 349-458, gnl|tetNig1|chr14 (4253048-4253159) | |
| 349-458, gnl|xenTro1|scaffold_39 (2625298-2625421) | |
| 597-797, gnl|bosTau2|chr16 (11471595-11471795) | |
| 597-797, gnl|canFam2|chr38 (17838502-17838764) | |
| 597-797, gnl|danRer3|chr20 (9005165-9004920) | |
| 597-797, gnl|dasNov1|scaffold_39072 (11673-11409) | |
| 597-797, gnl|echTel1|scaffold_319634 (8293-8043) | |
| 597-797, gnl|fr1|chrUn (80616774-80616539) | |
| 597-797, gnl|galGal2|chr3 (15152645-15152374) | |
| 597-797, gnl|hg17|chr1 (216624467-216624728) | |
| 597-797, gnl|Hg17|chr1 (216624694-216624494) | |
| 597-797, gnl|loxAfr1|scaffold_641 (6575-6835) | |
| 597-797, gnl|mm7|chr1 (184877984-184877733) | |
| 597-797, gnl|Mm7|chr1 (184877758-184877958) | |
| 597-797, gnl|monDom2|scaffold_13 (26169103-26169358) | |
| 597-797, gnl|oryCun1|scaffold_172551 (6969-7200) | |
| 597-797, gnl|panTro1|chr1 (200349709-200349970) | |
| 597-797, gnl|rheMac2|chr1 (150314283-150314022) | |
| 597-797, gnl|rn3|chr13 (101551344-101551088) | |
| 597-797, gnl|tetNig1|chr14 (4252288-4252524) | |
| 597-797, gnl|xenTro1|scaffold_39 (2620474-2620687) | |
| 902-1061, gnl|bosTau2|chr16 (11476470-11476629) | |
| 902-1061, gnl|Hg17|chr1 (216620731-216620412) | |
| 902-1061, gnl|Mm7|chr1 (184882055-184882214) | |
| 1062-1490, gnl|bosTau2|chr16 (11476649-11477104) | |
| 1062-1490, gnl|Hg17|chr1 (216620375-216619472) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 118-245, gnl|bosTau2|chr16 (11457137-11457264) | |
| 118-245, gnl|canFam2|chr38 (17851103-17851259) | |
| 118-245, gnl|danRer3|chr20 (8995038-8994887) | |
| 118-245, gnl|dasNov1|scaffold_39072 (557-401) | |
| 118-245, gnl|galGal2|chr3 (15146828-15146671) | |
| 118-245, gnl|hg17|chr1 (216641456-216641613) | |
| 118-245, gnl|Hg17|chr1 (216641591-216641464) | |
| 118-245, gnl|loxAfr1|scaffold_641 (16765-16920) | |
| 118-245, gnl|mm7|chr1 (184863821-184863667) | |
| 118-245, gnl|Mm7|chr1 (184863684-184863811) | |
| 118-245, gnl|monDom2|scaffold_13 (26189988-26190148) | |
| 118-245, gnl|oryCun1|scaffold_195699 (4714-4601) | |
| 118-245, gnl|panTro1|chr1 (200365721-200365878) | |
| 118-245, gnl|rn3|chr6 (67972051-67972180) | |
| 118-245, gnl|tetNig1|chr14 (4253430-4253552) | |
| 349-458, gnl|bosTau2|chr16 (11461220-11461329) | |
| 349-458, gnl|canFam2|chr38 (17845628-17845753) | |
| 349-458, gnl|danRer3|chr20 (8997728-8997616) | |
| 349-458, gnl|dasNov1|scaffold_39072 (4213-4089) | |
| 349-458, gnl|echTel1|scaffold_319634 (472-347) | |
| 349-458, gnl|fr1|chrUn (80615430-80615336) | |
| 349-458, gnl|galGal2|chr3 (15149453-15149321) | |
| 349-458, gnl|hg17|chr1 (216634574-216634699) | |
| 349-458, gnl|Hg17|chr1 (216634696-216634587) | |
| 349-458, gnl|mm7|chr1 (184871016-184870891) | |
| 349-458, gnl|Mm7|chr1 (184870892-184871001) | |
| 349-458, gnl|monDom2|scaffold_13 (26179110-26179235) | |
| 349-458, gnl|oryCun1|scaffold_172551 (16258-16383) | |
| 349-458, gnl|panTro1|chr1 (200359334-200359459) | |
| 349-458, gnl|rn3|chr13 (101544135-101544010) | |
| 349-458, gnl|tetNig1|chr14 (4253048-4253159) | |
| 349-458, gnl|xenTro1|scaffold_39 (2625298-2625421) | |
| 597-797, gnl|bosTau2|chr16 (11471595-11471795) | |
| 597-797, gnl|canFam2|chr38 (17838502-17838764) | |
| 597-797, gnl|danRer3|chr20 (9005165-9004920) | |
| 597-797, gnl|dasNov1|scaffold_39072 (11673-11409) | |
| 597-797, gnl|echTel1|scaffold_319634 (8293-8043) | |
| 597-797, gnl|fr1|chrUn (80616774-80616539) | |
| 597-797, gnl|galGal2|chr3 (15152645-15152374) | |
| 597-797, gnl|hg17|chr1 (216624467-216624728) | |
| 597-797, gnl|Hg17|chr1 (216624694-216624494) | |
| 597-797, gnl|loxAfr1|scaffold_641 (6575-6835) | |
| 597-797, gnl|mm7|chr1 (184877984-184877733) | |
| 597-797, gnl|Mm7|chr1 (184877758-184877958) | |
| 597-797, gnl|monDom2|scaffold_13 (26169103-26169358) | |
| 597-797, gnl|oryCun1|scaffold_172551 (6969-7200) | |
| 597-797, gnl|panTro1|chr1 (200349709-200349970) | |
| 597-797, gnl|rheMac2|chr1 (150314283-150314022) | |
| 597-797, gnl|rn3|chr13 (101551344-101551088) | |
| 597-797, gnl|tetNig1|chr14 (4252288-4252524) | |
| 597-797, gnl|xenTro1|scaffold_39 (2620474-2620687) | |
| 902-1061, gnl|bosTau2|chr16 (11476470-11476629) | |
| 902-1061, gnl|Hg17|chr1 (216620731-216620412) | |
| 902-1061, gnl|Mm7|chr1 (184882055-184882214) | |
| 1062-1490, gnl|bosTau2|chr16 (11476649-11477104) | |
| 1062-1490, gnl|Hg17|chr1 (216620375-216619472) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| sin (0.874738) | |
| duo (0.691204) | |
| cje (0.330469) | |
| csp (0.322373) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cki (0.165235) | |
| fco (0.157208) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.874738) | |
| duo (0.691204) | |
| cje (0.330469) | |
| csp (0.322373) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cki (0.165235) | |
| fco (0.157208) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| sug (0.127291) | |
| thg (0.126791) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) |