Ss1.1-Pig4-TMW8049I08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAATGATTGGAGCAGCCCACGCGACAGGTGAGGTCCTGGTGTTCCTGGACAGCCACTG TGAGGTGAACGTGCTGTGGCTGCAGCCCCTGCTGGCCGCCATCCGGGAGGACCGGCACAC GGTGGTGTGCCCGGTGATCGACATCATCAGCGCCGACACGCTCGCCTACAGCGCCTCCCC CGTGGTGCGGGGGGGCTTCAACTGGGGGCTGCACTTCAGGTGGGACCTTGTTCCCCTTTC CGAGCTGGAAGGGCCGGAGGGAGCCACGGCACCAATCAAGTCACCTACAATGGCTGGAGG GCTGTTTGCCATGAACAGAAACTATTTCAATGAACTTGGACAGTATGACAGTGGCATGGA TATCTGGGGAGGAGAAAATTTAGAAATATCATTTCGGATCTGGATGTGTGGAGGGAAGCT CTTCATCATCCCCTGCTCTAGAGTCGGACACATCTTCCGGAAGAGGCGACCATACGGTTC TCCAGAAGGCCAGGACACCATGACGCACAACTCCTTGAGGCTGGCACATGTTTGGTTGGA TGAGTATAAGGAGCAGTATTTTTCCTTAAGACCTGATCTGAGGACCAGAAGCTATGGGAA CATCAGTGAGCGTGTTGAATTGAGGAAGAAGTTGGATTGTAAATCATTTAAATGGTATCT GGATAATATTTACCCAGAGATGCAGGTATCTGGGCCCAATGCCAAACCCCAGCAGCCCAT TTTTATCAATAGAGGGCCGAAGCGCCCCAAAGTCCTTCAACGTGGAAGGCTCTATCACCT CCAGACCAACAAGTGTCTGGCAGCCCAAGGCCGCCCGAGTCAGAAAGGAGGCCTGGTAGT GCTGAAGGCCTGTGACTACGGTGACCCTGATCAGATCTGGATTTATAATGAAGAACATGA ACTGATTTTAAATAATCTCCTGTGCTTGGATATGTCAGAAACTCGGTCGTCAGACCCACC ACGACTCATGAAGTGCCATGGGTCAGGCGGCTCCCAGCAGTGGACCTTTGGGAGGAATAA TCGGCTGTACCAGGTGTCTGTTGGGCAGTGCCTGAGCGTGGTGGATCCACTGAGCCCCAG GGGCTCTGTTGCCATGGCGATCTGTGATGGCTCCTCCCCACAGCAGTGGCGTTTGGAAGA TTAAGGTGGATGCCGTGGCTGGAACGGGGGTTGTCACGCTCGTCCCCACCATGGAGACGC CCGGGAAGATGGGCAGAGGTGAGCGAGCAGACACGGCAGAGACTGGAGCCCCGAGTGACC GTCCGGAGGTGAAGACGTTGTTTGACCGAGATGTTGGGGTCATTTCTGAACTGCTGTTGA GGAATTTCTTGCTTACGGTAGGAAACCAGAATACCGTTTTCACTCCTGAGGAGTCAGGTT TGTACGGAAGGATAAAGCCCAGGAAATTGACGTGTCTCTTCATATTTATTTCTGCTCCTT TTAAATCCCCTGTAAGAATGGAGTGGCATTTATGTGATCAGGAGCTTGTCGTGATTTCCT TTCTTAGAAGACTTCATCGGTGATGGTTAATTTTTTTTTTTGGTCTATTACCATGTTCTA AATAGATAGTTTTAAATAAACTGGTTGAATCCACATTACTTTTAACTTCAGAAGACATCA TTTATAAGATTATATTTAAGAGGCAGTTAACTATTTTAAATTATTTTGATGAATTATGGT ACTATCTACATTTACAATAAAGGATTCTTTTGATTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAATGATTGGAGCAGCCCACGCGACAGGTGAGGTCCTGGTGTTCCTGGACAGCCACTG TGAGGTGAACGTGCTGTGGCTGCAGCCCCTGCTGGCCGCCATCCGGGAGGACCGGCACAC GGTGGTGTGCCCGGTGATCGACATCATCAGCGCCGACACGCTCGCCTACAGCGCCTCCCC CGTGGTGCGGGGGGGCTTCAACTGGGGGCTGCACTTCAGGTGGGACCTTGTTCCCCTTTC CGAGCTGGAAGGGCCGGAGGGAGCCACGGCACCAATCAAGTCACCTACAATGGCTGGAGG GCTGTTTGCCATGAACAGAAACTATTTCAATGAACTTGGACAGTATGACAGTGGCATGGA TATCTGGGGAGGAGAAAATTTAGAAATATCATTTCGGATCTGGATGTGTGGAGGGAAGCT CTTCATCATCCCCTGCTCTAGAGTCGGACACATCTTCCGGAAGAGGCGACCATACGGTTC TCCAGAAGGCCAGGACACCATGACGCACAACTCCTTGAGGCTGGCACATGTTTGGTTGGA TGAGTATAAGGAGCAGTATTTTTCCTTAAGACCTGATCTGAGGACCAGAAGCTATGGGAA CATCAGTGAGCGTGTTGAATTGAGGAAGAAGTTGGATTGTAAATCATTTAAATGGTATCT GGATAATATTTACCCAGAGATGCAGGTATCTGGGCCCAATGCCAAACCCCAGCAGCCCAT TTTTATCAATAGAGGGCCGAAGCGCCCCAAAGTCCTTCAACGTGGAAGGCTCTATCACCT CCAGACCAACAAGTGTCTGGCAGCCCAAGGCCGCCCGAGTCAGAAAGGAGGCCTGGTAGT GCTGAAGGCCTGTGACTACGGTGACCCTGATCAGATCTGGATTTATAATGAAGAACATGA ACTGATTTTAAATAATCTCCTGTGCTTGGATATGTCAGAAACTCGGTCGTCAGACCCACC ACGACTCATGAAGTGCCATGGGTCAGGCGGCTCCCAGCAGTGGACCTTTGGGAGGAATAA TCGGCTGTACCAGGTGTCTGTTGGGCAGTGCCTGAGCGTGGTGGATCCACTGAGCCCCAG GGGCTCTGTTGCCATGGCGATCTGTGATGGCTCCTCCCCACAGCAGTGGCGTTTGGAAGA TTAAGGTGGATGCCGTGGCTGGAACGGGGGTTGTCACGCTCGTCCCCACCATGGAGACGC CCGGGAAGATGGGCAGAGGTGAGCGAGCAGACACGGCAGAGACTGGAGCCCCGAGTGACC GTCCGGAGGTGAAGACGTTGTTTGACCGAGATGTTGGGGTCATTTCTGAACTGCTGTTGA GGAATTTCTTGCTTACGGTAGGAAACCAGAATACCGTTTTCACTCCTGAGGAGTCAGGTT TGTACGGAAGGATAAAGCCCAGGAAATTGACGTGTCTCTTCATATTTATTTCTGCTCCTT TTAAATCCCCTGTAAGAATGGAGTGGCATTTATGTGATCAGGAGCTTGTCGTGATTTCCT TTCTTAGAAGACTTCATCGGTGATGGTTAATTTTTTTTTTTGGTCTATTACCATGTTCTA AATAGATAGTTTTAAATAAACTGGTTGAATCCACATTACTTTTAACTTCAGAAGACATCA TTTATAAGATTATATTTAAGAGGCAGTTAACTATTTTAAATTATTTTGATGAATTATGGT ACTATCTACATTTACAATAAAGGATTCTTTTGATTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 1-690, gnl|bosTau2|chr12 (2698104-2698795) | |
| 1-690, gnl|Hg17|chr1 (65754959-65754275) | |
| 1-690, gnl|Mm7|chr5 (24292614-24302567) | |
| 56-485, gnl|bosTau2|chr10 (16594588-16595020) | |
| 56-485, gnl|Hg17|chr18 (31517502-31525061) | |
| 56-485, gnl|Mm7|chr14 (106984736-106984300) | |
| 873-1012, gnl|bosTau2|chr4 (64789562-64789423) | |
| 873-1012, gnl|canFam2|chr16 (18898345-18898257) | |
| 873-1012, gnl|canFam2|chr16 (18898206-18898352) | |
| 873-1012, gnl|danRer3|chr24 (5287805-5287657) | |
| 873-1012, gnl|dasNov1|scaffold_21476 (22306-22393) | |
| 873-1012, gnl|dasNov1|scaffold_38700 (12936-13088) | |
| 873-1012, gnl|echTel1|scaffold_321584 (40101-40013) | |
| 873-1012, gnl|echTel1|scaffold_321584 (39962-40108) | |
| 873-1012, gnl|fr1|chrUn (117279623-117279544) | |
| 873-1012, gnl|fr1|chrUn (117279497-117279643) | |
| 873-1012, gnl|galGal2|chr2 (5991307-5991219) | |
| 873-1012, gnl|galGal2|chr2 (5991168-5991311) | |
| 873-1012, gnl|hg17|chr1 (65753960-65754041) | |
| 873-1012, gnl|hg17|chr7 (151255564-151255714) | |
| 873-1012, gnl|Hg17|chr7 (151255562-151255701) | |
| 873-1012, gnl|mm7|chr5 (24305594-24305506) | |
| 873-1012, gnl|mm7|chr5 (24305455-24305601) | |
| 873-1012, gnl|Mm7|chr5 (24305453-24305592) | |
| 873-1012, gnl|monDom2|scaffold_7 (12729576-12729510) | |
| 873-1012, gnl|monDom2|scaffold_7 (12729459-12729606) | |
| 873-1012, gnl|oryCun1|scaffold_202905 (11580-11515) | |
| 873-1012, gnl|oryCun1|scaffold_202905 (11464-11609) | |
| 873-1012, gnl|panTro1|chr1 (64088175-64088256) | |
| 873-1012, gnl|panTro1|chr6_random (15666921-15666771) | |
| 873-1012, gnl|rheMac2|chr1 (68349679-68349759) | |
| 873-1012, gnl|rheMac2|chr3 (189067584-189067734) | |
| 873-1012, gnl|rn3|chr4 (5242623-5242711) | |
| 873-1012, gnl|rn3|chr4 (5242762-5242612) | |
| 873-1012, gnl|tetNig1|chrUn_random (934830-934687) | |
| 873-1012, gnl|xenTro1|scaffold_57 (308889-309032) | |
| 1264-1431, gnl|bosTau2|chr4 (64789050-64788885) | |
| 1264-1431, gnl|canFam2|chr16 (18899055-18898889) | |
| 1264-1431, gnl|canFam2|chr16 (18898840-18899054) | |
| 1264-1431, gnl|dasNov1|scaffold_21476 (21779-21945) | |
| 1264-1431, gnl|dasNov1|scaffold_21476 (22004-21781) | |
| 1264-1431, gnl|echTel1|scaffold_321584 (40861-40665) | |
| 1264-1431, gnl|echTel1|scaffold_321584 (40618-40861) | |
| 1264-1431, gnl|galGal2|chr2 (5992715-5992549) | |
| 1264-1431, gnl|galGal2|chr2 (5992480-5992731) | |
| 1264-1431, gnl|hg17|chr1 (65753448-65753618) | |
| 1264-1431, gnl|hg17|chr7 (151256552-151256801) | |
| 1264-1431, gnl|Hg17|chr7 (151256541-151256839) | |
| 1264-1431, gnl|loxAfr1|scaffold_199872 (994-1163) | |
| 1264-1431, gnl|loxAfr1|scaffold_199872 (1221-994) | |
| 1264-1431, gnl|mm7|chr5 (24306143-24306019) | |
| 1264-1431, gnl|mm7|chr5 (24305946-24306139) | |
| 1264-1431, gnl|monDom2|scaffold_7 (12730514-12730344) | |
| 1264-1431, gnl|monDom2|scaffold_7 (12730294-12730514) | |
| 1264-1431, gnl|oryCun1|scaffold_112000 (1112-940) | |
| 1264-1431, gnl|oryCun1|scaffold_112000 (880-1112) | |
| 1264-1431, gnl|panTro1|chr1 (64087663-64087833) | |
| 1264-1431, gnl|panTro1|chr6_random (15665933-15665711) | |
| 1264-1431, gnl|rheMac2|chr1 (68349167-68349337) | |
| 1264-1431, gnl|rheMac2|chr3 (189068597-189068820) | |
| 1264-1431, gnl|rn3|chr4 (5242134-5242253) | |
| 1264-1431, gnl|rn3|chr4 (5242328-5242134) | |
| 1468-1716, gnl|bosTau2|chr4 (64788892-64788659) | |
| 1468-1716, gnl|Hg17|chr7 (151256788-151257073) | |
| 1468-1716, gnl|Mm7|chr5 (24306130-24306400) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-690, gnl|bosTau2|chr12 (2698104-2698795) | |
| 1-690, gnl|Hg17|chr1 (65754959-65754275) | |
| 1-690, gnl|Mm7|chr5 (24292614-24302567) | |
| 56-485, gnl|bosTau2|chr10 (16594588-16595020) | |
| 56-485, gnl|Hg17|chr18 (31517502-31525061) | |
| 56-485, gnl|Mm7|chr14 (106984736-106984300) | |
| 873-1012, gnl|bosTau2|chr4 (64789562-64789423) | |
| 873-1012, gnl|canFam2|chr16 (18898345-18898257) | |
| 873-1012, gnl|canFam2|chr16 (18898206-18898352) | |
| 873-1012, gnl|danRer3|chr24 (5287805-5287657) | |
| 873-1012, gnl|dasNov1|scaffold_21476 (22306-22393) | |
| 873-1012, gnl|dasNov1|scaffold_38700 (12936-13088) | |
| 873-1012, gnl|echTel1|scaffold_321584 (40101-40013) | |
| 873-1012, gnl|echTel1|scaffold_321584 (39962-40108) | |
| 873-1012, gnl|fr1|chrUn (117279623-117279544) | |
| 873-1012, gnl|fr1|chrUn (117279497-117279643) | |
| 873-1012, gnl|galGal2|chr2 (5991307-5991219) | |
| 873-1012, gnl|galGal2|chr2 (5991168-5991311) | |
| 873-1012, gnl|hg17|chr1 (65753960-65754041) | |
| 873-1012, gnl|hg17|chr7 (151255564-151255714) | |
| 873-1012, gnl|Hg17|chr7 (151255562-151255701) | |
| 873-1012, gnl|mm7|chr5 (24305594-24305506) | |
| 873-1012, gnl|mm7|chr5 (24305455-24305601) | |
| 873-1012, gnl|Mm7|chr5 (24305453-24305592) | |
| 873-1012, gnl|monDom2|scaffold_7 (12729576-12729510) | |
| 873-1012, gnl|monDom2|scaffold_7 (12729459-12729606) | |
| 873-1012, gnl|oryCun1|scaffold_202905 (11580-11515) | |
| 873-1012, gnl|oryCun1|scaffold_202905 (11464-11609) | |
| 873-1012, gnl|panTro1|chr1 (64088175-64088256) | |
| 873-1012, gnl|panTro1|chr6_random (15666921-15666771) | |
| 873-1012, gnl|rheMac2|chr1 (68349679-68349759) | |
| 873-1012, gnl|rheMac2|chr3 (189067584-189067734) | |
| 873-1012, gnl|rn3|chr4 (5242623-5242711) | |
| 873-1012, gnl|rn3|chr4 (5242762-5242612) | |
| 873-1012, gnl|tetNig1|chrUn_random (934830-934687) | |
| 873-1012, gnl|xenTro1|scaffold_57 (308889-309032) | |
| 1264-1431, gnl|bosTau2|chr4 (64789050-64788885) | |
| 1264-1431, gnl|canFam2|chr16 (18899055-18898889) | |
| 1264-1431, gnl|canFam2|chr16 (18898840-18899054) | |
| 1264-1431, gnl|dasNov1|scaffold_21476 (21779-21945) | |
| 1264-1431, gnl|dasNov1|scaffold_21476 (22004-21781) | |
| 1264-1431, gnl|echTel1|scaffold_321584 (40861-40665) | |
| 1264-1431, gnl|echTel1|scaffold_321584 (40618-40861) | |
| 1264-1431, gnl|galGal2|chr2 (5992715-5992549) | |
| 1264-1431, gnl|galGal2|chr2 (5992480-5992731) | |
| 1264-1431, gnl|hg17|chr1 (65753448-65753618) | |
| 1264-1431, gnl|hg17|chr7 (151256552-151256801) | |
| 1264-1431, gnl|Hg17|chr7 (151256541-151256839) | |
| 1264-1431, gnl|loxAfr1|scaffold_199872 (994-1163) | |
| 1264-1431, gnl|loxAfr1|scaffold_199872 (1221-994) | |
| 1264-1431, gnl|mm7|chr5 (24306143-24306019) | |
| 1264-1431, gnl|mm7|chr5 (24305946-24306139) | |
| 1264-1431, gnl|monDom2|scaffold_7 (12730514-12730344) | |
| 1264-1431, gnl|monDom2|scaffold_7 (12730294-12730514) | |
| 1264-1431, gnl|oryCun1|scaffold_112000 (1112-940) | |
| 1264-1431, gnl|oryCun1|scaffold_112000 (880-1112) | |
| 1264-1431, gnl|panTro1|chr1 (64087663-64087833) | |
| 1264-1431, gnl|panTro1|chr6_random (15665933-15665711) | |
| 1264-1431, gnl|rheMac2|chr1 (68349167-68349337) | |
| 1264-1431, gnl|rheMac2|chr3 (189068597-189068820) | |
| 1264-1431, gnl|rn3|chr4 (5242134-5242253) | |
| 1264-1431, gnl|rn3|chr4 (5242328-5242134) | |
| 1468-1716, gnl|bosTau2|chr4 (64788892-64788659) | |
| 1468-1716, gnl|Hg17|chr7 (151256788-151257073) | |
| 1468-1716, gnl|Mm7|chr5 (24306130-24306400) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| cki (2.14805) | |
| cut (0.849618) | |
| ste (0.811249) | |
| kid (0.648677) | |
| hea (0.613497) | |
| ssp (0.542079) | |
| cje (0.495704) | |
| spc (0.453463) | |
| ecc (0.345105) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| fat (0.294855) | |
| che (0.272628) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| ctl (0.153069) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (2.14805) | |
| cut (0.849618) | |
| ste (0.811249) | |
| kid (0.648677) | |
| hea (0.613497) | |
| ssp (0.542079) | |
| cje (0.495704) | |
| spc (0.453463) | |
| ecc (0.345105) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| isp (0.300752) | |
| fat (0.294855) | |
| che (0.272628) | |
| bla (0.248694) | |
| pgl (0.236967) | |
| ece (0.229305) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| ctl (0.153069) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ova (0.129132) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |