Non-Coding RNA Search

Ss1.1-Pig4-TMW8049I15.3

Sequence:


               
               GCTGTTTCACAGCATGAGCTGTGGTACACAGAAATGGGGGTTCTCCTTTCGTTTTCATTT
TATCCCCAAATGGCAGCTTTTCTCCCATTGTTTTATCTTCCTGTTTCCCAAATAATTCCT
CTTATTTTGTCTTTTGTACCAGTTTCTGGAGGCCCTTGTCGTTTCAAAAAGATGAATCTC
TCTTTACTCTGGCAAACCTGTGGGTGATTCCACAAAGACACAGTGTTACTTAGGTATCAG
AATTATGGTAGGAAAAAAGGTCCTAGTATATTCCTATATAAAGCATTTGGAAAATGACCT
TGTTGCCCTAAGAAACTGAAAATAGGCTTCTTGGGTTAGGATACAAAGACATTGACTGTC
TTGCATATCCAGTCTTCTTATAGCATTATTCCAAACTCTAGCTGTTTCAGTAGTTCTATG
AGGATTGCAAGTCATAGGTGTGTTTGGCATATGGATCCATCTCCTTCATCTCTATTCTGT
TTTTTCCTCACAGAATTTTGAATCAAAGCATTAATGATATTGGCTAATCACATAAATTCT
TTAGCTGAGATTAATTTGACCCTGTAATAGAAATGAGAGAAGTCTAAAAAGCCTCTTAGA
AATTTTAACCTTGGAAGACTTTTCATTATGTCCCATCTTTATAGATAGGTGTGGCAGGTG
TTTTTTTTTTGTTTGTTTTTTTAATAAAGTCATTTAACTACAACAAAAATTTTAAGGTAG
GCCTTTTGACATTGTGTACTTACAGTTCTGTCCCTCTGCCTGTAACAAATTTTGTTTTTG
TTACCACGAACTATGTGAAAGAAGTAAATCTGCCCCAATTCTGTATGAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTTTCACAGCATGAGCTGTGGTACACAGAAATGGGGGTTCTCCTTTCGTTTTCATTT
TATCCCCAAATGGCAGCTTTTCTCCCATTGTTTTATCTTCCTGTTTCCCAAATAATTCCT
CTTATTTTGTCTTTTGTACCAGTTTCTGGAGGCCCTTGTCGTTTCAAAAAGATGAATCTC
TCTTTACTCTGGCAAACCTGTGGGTGATTCCACAAAGACACAGTGTTACTTAGGTATCAG
AATTATGGTAGGAAAAAAGGTCCTAGTATATTCCTATATAAAGCATTTGGAAAATGACCT
TGTTGCCCTAAGAAACTGAAAATAGGCTTCTTGGGTTAGGATACAAAGACATTGACTGTC
TTGCATATCCAGTCTTCTTATAGCATTATTCCAAACTCTAGCTGTTTCAGTAGTTCTATG
AGGATTGCAAGTCATAGGTGTGTTTGGCATATGGATCCATCTCCTTCATCTCTATTCTGT
TTTTTCCTCACAGAATTTTGAATCAAAGCATTAATGATATTGGCTAATCACATAAATTCT
TTAGCTGAGATTAATTTGACCCTGTAATAGAAATGAGAGAAGTCTAAAAAGCCTCTTAGA
AATTTTAACCTTGGAAGACTTTTCATTATGTCCCATCTTTATAGATAGGTGTGGCAGGTG
TTTTTTTTTTGTTTGTTTTTTTAATAAAGTCATTTAACTACAACAAAAATTTTAAGGTAG
GCCTTTTGACATTGTGTACTTACAGTTCTGTCCCTCTGCCTGTAACAAATTTTGTTTTTG
TTACCACGAACTATGTGAAAGAAGTAAATCTGCCCCAATTCTGTATGAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.84546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.84546

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of CR936741, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of CR936741, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-828, gnl|bosTau2|chr3 (77436711-77435894)
               

               
               1-828, gnl|Hg17|chr1 (35555199-35556025)
               

               
               1-828, gnl|Mm7|chr4 (126307982-126307179)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr3 (77436711-77435894)
               

               
               1-828, gnl|Hg17|chr1 (35555199-35556025)
               

               
               1-828, gnl|Mm7|chr4 (126307982-126307179)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sag (0.182715)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ret (0.128733)

	1-828, gnl\|bosTau2\|chr3 (77436711-77435894)
	1-828, gnl\|Hg17\|chr1 (35555199-35556025)
	1-828, gnl\|Mm7\|chr4 (126307982-126307179)

	sag (0.182715)
	rec (0.17307)
	isp (0.150376)
	liv (0.146284)
	ret (0.128733)