Non-Coding RNA Search

Ss1.1-Pig4-TMW8049I17.3

Sequence:


               
               GGAGTTGCGCCCAGCCCCACATGTGCTCTTTGCGTGTCCCTCCAGGCATCAGGTTCTCAT
CATTTCCCCAGCACAGGGTGTGGCCAGGGCTGAGCAGACCAAAAGCACCTCTAGAAACAG
GGTCGAAAGTCTCAGGTTCCCGCAGAGGAGGATGTGTCTAGGAAGGCCTGGCAGAATCCT
TCAGCATTAAGGGGAGCAAAACACGGGGAGCCCCTGCAACTCAAAGGGCCTCAGCCCACG
TATTACCCTGGTGTTTTCAGCCGGGCCAGGTAGCCGCTGGGCACTCAGATGCCCCTGTTC
AGAGTTTTGGGCACCCCTCCTCCCATCCTCAGGCTACGATTCCCCTCCCTGGCCCTTCAT
CCTGTGGAGTCTGAGACCAGGCGGGCTGAGCAGAGGTCCTGAAGCCCTCGCCCTTTGGAG
GCCTGGGAAGTGTAGGATCTCGCCTGGCTGAGTCTCAGCTTCCAGGGCTGTTCACCAGCA
GAACAGTGAGTTATGGGACAAGGCCCCTTGGGGTCAGCCCTCCCCTCTTTCTGACAGTTT
TCTGTTCACTTCTGGACTTGGCGGGGCTCAGTGGCTCTCCCTAAGCCGTGAGCAGGCTCA
GGCACCCTTTTCTTCCCCAGGAGCTGCTCTGCCTTTTGGAATTATTTATTTATTTATTTC
ATGGTTCCTGGGAACATGTGGCATAAGGAATGGGATGAGGAGGATGGGGGCTTCTCCGGC
CCTGGGACCTTTCCCTGGAGTCATGGGCTGCCTGGGACTCGGAACCCTGGGAGACAGACG
TTTGTGTACGCAAAGCAGGGACCCCAGGGGGCAGCTTGAGGGAGAAAAGGATCCTCCTAG
GCCGGCTTTCTCTCCAGGCCAACCAGTCTAGGAGCCGGGGGCCTGCTCCAGGCCAGAGGG
GCGAGTCCCTGGGGAACCAGGCAGGCCTTGGTGGACCCCCTTCCCCGGGCTCCTTTGTCC
TGTTGAAGAGATGAGCGTTAGGTACCTGGGCTTTATTTACACTGGAAAGGAACTAAAAGG
ATGTCTGTGTATATGGAGAATTGTCAATAAAAAGGCCTCAAGCTTCGTAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTTGCGCCCAGCCCCACATGTGCTCTTTGCGTGTCCCTCCAGGCATCAGGTTCTCAT
CATTTCCCCAGCACAGGGTGTGGCCAGGGCTGAGCAGACCAAAAGCACCTCTAGAAACAG
GGTCGAAAGTCTCAGGTTCCCGCAGAGGAGGATGTGTCTAGGAAGGCCTGGCAGAATCCT
TCAGCATTAAGGGGAGCAAAACACGGGGAGCCCCTGCAACTCAAAGGGCCTCAGCCCACG
TATTACCCTGGTGTTTTCAGCCGGGCCAGGTAGCCGCTGGGCACTCAGATGCCCCTGTTC
AGAGTTTTGGGCACCCCTCCTCCCATCCTCAGGCTACGATTCCCCTCCCTGGCCCTTCAT
CCTGTGGAGTCTGAGACCAGGCGGGCTGAGCAGAGGTCCTGAAGCCCTCGCCCTTTGGAG
GCCTGGGAAGTGTAGGATCTCGCCTGGCTGAGTCTCAGCTTCCAGGGCTGTTCACCAGCA
GAACAGTGAGTTATGGGACAAGGCCCCTTGGGGTCAGCCCTCCCCTCTTTCTGACAGTTT
TCTGTTCACTTCTGGACTTGGCGGGGCTCAGTGGCTCTCCCTAAGCCGTGAGCAGGCTCA
GGCACCCTTTTCTTCCCCAGGAGCTGCTCTGCCTTTTGGAATTATTTATTTATTTATTTC
ATGGTTCCTGGGAACATGTGGCATAAGGAATGGGATGAGGAGGATGGGGGCTTCTCCGGC
CCTGGGACCTTTCCCTGGAGTCATGGGCTGCCTGGGACTCGGAACCCTGGGAGACAGACG
TTTGTGTACGCAAAGCAGGGACCCCAGGGGGCAGCTTGAGGGAGAAAAGGATCCTCCTAG
GCCGGCTTTCTCTCCAGGCCAACCAGTCTAGGAGCCGGGGGCCTGCTCCAGGCCAGAGGG
GCGAGTCCCTGGGGAACCAGGCAGGCCTTGGTGGACCCCCTTCCCCGGGCTCCTTTGTCC
TGTTGAAGAGATGAGCGTTAGGTACCTGGGCTTTATTTACACTGGAAAGGAACTAAAAGG
ATGTCTGTGTATATGGAGAATTGTCAATAAAAAGGCCTCAAGCTTCGTAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               371-528, - strand, RNAz p=0.980498
               

               
               836-940, + strand, RNAz p=0.613251

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-528, - strand, RNAz p=0.980498
               

               
               836-940, + strand, RNAz p=0.613251

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               365-488, + strand, RNAmicro p=0.928662

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               365-488, + strand, RNAmicro p=0.928662

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL834235, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL834235, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               230-1069, gnl|bosTau2|chr26 (10386906-10386061)
               

               
               230-1069, gnl|Hg17|chr10 (99509777-99510643)
               

               
               230-1069, gnl|Mm7|chr19 (42084797-42085517)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-1069, gnl|bosTau2|chr26 (10386906-10386061)
               

               
               230-1069, gnl|Hg17|chr10 (99509777-99510643)
               

               
               230-1069, gnl|Mm7|chr19 (42084797-42085517)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               ebs (0.118301)

	371-528, - strand, RNAz p=0.980498
	836-940, + strand, RNAz p=0.613251

	230-1069, gnl\|bosTau2\|chr26 (10386906-10386061)
	230-1069, gnl\|Hg17\|chr10 (99509777-99510643)
	230-1069, gnl\|Mm7\|chr19 (42084797-42085517)

	fli (0.202881)
	nbm (0.198649)
	nje (0.16592)
	cag (0.151194)
	ebs (0.118301)