Non-Coding RNA Search

Ss1.1-Pig4-TMW8049I19.3

Sequence:


               
               TGTTGATAGTGATGTATAATAATACAACCTGGAGTAAATTACCTACAAAAATTCATTCTG
GCAGTAGGACAGTAATAAAGGAGGAATTGTTTTTCCAAACTTTATTGTGAAAAATTTTGA
AGTCCTCACGTACAAGCAAATTGAATGAAAAAGACTAAGGTGCTTTTCAAAAGACTAACT
GAAATCATCACAGGCCAAAACAGCAATATCTGTTAATTTAGTTCAATAAGAACAGTGAAT
CTTTTTGTTCACTAACGAGTTCTGAGTCAATTAGTTGTAAAAACAAAATTAACTTGTTTT
AGTGAGCCACTGTTATTACAAAGACAAAATGTGGTGCAGAAAATCTTTGCACCTTTCTGC
ATAAACTGTTAGACATGACTTTGTTTGCTGCTGTTGTGTTTCCAGATATTCCTGCAATAT
GGGTGACAACTGTGGGAAAAGATTGTCTTCTCCTACGGAGACTAGTGAGCACAATGATAC
TAACCACTTAACTTTGCTGTTGAGTAACAAATGCAATAATTGCCTCTCATGGTGAAAAGT
TGTCTAATACTCCTAAAGTTTTTTAATTCTCTGGGTTATATCACTGGAGAGTATTGTGTA
TCTACCTACTATTTTAATGGGAATTGATTTTTTATTAAGCCTGATTTACATGGATTGAGT
TTATACCACCTGCTGTTTATCAATGAAAAACGGTGAAAGTAATGTGCGTTTGTCAGCAGG
AATGGGTTTTCTGGCCTCTTAACCCTAACAGCCCTTAACTTCTTCCCAAATGCACACCTT
TTATTACTTCTTCTGCATTGTCGCCTTGTAGGTGCCTTTCTGTAGGCATCTCAGGAGGAC
TCTCATCACTCATCTATTACAAATGACTTGGAATCTTGTGCTCTAGCTCTACTGCTCAAG
GAAGAAGCAATATATCTTTAATTCAGGGCTCTGCCCATTGCTATTCAACTCTAACCTGAG
AGCAGTGCCACTCCTGTAACTCCAGTGTTCTGAATTCAGGACTTCAGGTTTCAAACAGAA
ACTGACCATTGATCATAACCCTGCAATGTGTGTCAAAGAAGGAAATCATTTGTTGAGTTC
CATATAGTTGCTGAATCTTCTGATCCAGGGATATTTACATTTCTGGATTAAAATCAGTGT
ACTTATGGAAAATAAAGGAATGTTTGAAATTGTGTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGATAGTGATGTATAATAATACAACCTGGAGTAAATTACCTACAAAAATTCATTCTG
GCAGTAGGACAGTAATAAAGGAGGAATTGTTTTTCCAAACTTTATTGTGAAAAATTTTGA
AGTCCTCACGTACAAGCAAATTGAATGAAAAAGACTAAGGTGCTTTTCAAAAGACTAACT
GAAATCATCACAGGCCAAAACAGCAATATCTGTTAATTTAGTTCAATAAGAACAGTGAAT
CTTTTTGTTCACTAACGAGTTCTGAGTCAATTAGTTGTAAAAACAAAATTAACTTGTTTT
AGTGAGCCACTGTTATTACAAAGACAAAATGTGGTGCAGAAAATCTTTGCACCTTTCTGC
ATAAACTGTTAGACATGACTTTGTTTGCTGCTGTTGTGTTTCCAGATATTCCTGCAATAT
GGGTGACAACTGTGGGAAAAGATTGTCTTCTCCTACGGAGACTAGTGAGCACAATGATAC
TAACCACTTAACTTTGCTGTTGAGTAACAAATGCAATAATTGCCTCTCATGGTGAAAAGT
TGTCTAATACTCCTAAAGTTTTTTAATTCTCTGGGTTATATCACTGGAGAGTATTGTGTA
TCTACCTACTATTTTAATGGGAATTGATTTTTTATTAAGCCTGATTTACATGGATTGAGT
TTATACCACCTGCTGTTTATCAATGAAAAACGGTGAAAGTAATGTGCGTTTGTCAGCAGG
AATGGGTTTTCTGGCCTCTTAACCCTAACAGCCCTTAACTTCTTCCCAAATGCACACCTT
TTATTACTTCTTCTGCATTGTCGCCTTGTAGGTGCCTTTCTGTAGGCATCTCAGGAGGAC
TCTCATCACTCATCTATTACAAATGACTTGGAATCTTGTGCTCTAGCTCTACTGCTCAAG
GAAGAAGCAATATATCTTTAATTCAGGGCTCTGCCCATTGCTATTCAACTCTAACCTGAG
AGCAGTGCCACTCCTGTAACTCCAGTGTTCTGAATTCAGGACTTCAGGTTTCAAACAGAA
ACTGACCATTGATCATAACCCTGCAATGTGTGTCAAAGAAGGAAATCATTTGTTGAGTTC
CATATAGTTGCTGAATCTTCTGATCCAGGGATATTTACATTTCTGGATTAAAATCAGTGT
ACTTATGGAAAATAAAGGAATGTTTGAAATTGTGTAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               202-312, - strand, RNAz p=0.727415
               

               
               750-864, - strand, RNAz p=0.971891
               

               
               762-863, - strand, RNAz p=0.995298
               

               
               904-1173, - strand, RNAz p=0.962345

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-312, - strand, RNAz p=0.727415
               

               
               750-864, - strand, RNAz p=0.971891
               

               
               762-863, - strand, RNAz p=0.995298
               

               
               904-1173, - strand, RNAz p=0.962345

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               19-1173, gnl|bosTau2|chr28 (13113024-13114194)
               

               
               19-1173, gnl|canFam2|chr4 (17907254-17908174)
               

               
               19-1173, gnl|dasNov1|scaffold_2201 (6430-5531)
               

               
               19-1173, gnl|echTel1|scaffold_316943 (2699-3610)
               

               
               19-1173, gnl|hg17|chr10 (64237616-64238562)
               

               
               19-1173, gnl|Hg17|chr10 (64237698-64239208)
               

               
               19-1173, gnl|loxAfr1|scaffold_5489 (84378-83444)
               

               
               19-1173, gnl|mm7|chr10 (67149122-67148189)
               

               
               19-1173, gnl|Mm7|chr10 (67149042-67147876)
               

               
               19-1173, gnl|monDom2|scaffold_67 (3142461-3143451)
               

               
               19-1173, gnl|oryCun1|scaffold_208911 (43203-44056)
               

               
               19-1173, gnl|panTro1|chr8 (65071778-65072717)
               

               
               19-1173, gnl|rheMac2|chr9 (74452644-74451702)
               

               
               19-1173, gnl|rn3|chr20 (21894175-21895044)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-1173, gnl|bosTau2|chr28 (13113024-13114194)
               

               
               19-1173, gnl|canFam2|chr4 (17907254-17908174)
               

               
               19-1173, gnl|dasNov1|scaffold_2201 (6430-5531)
               

               
               19-1173, gnl|echTel1|scaffold_316943 (2699-3610)
               

               
               19-1173, gnl|hg17|chr10 (64237616-64238562)
               

               
               19-1173, gnl|Hg17|chr10 (64237698-64239208)
               

               
               19-1173, gnl|loxAfr1|scaffold_5489 (84378-83444)
               

               
               19-1173, gnl|mm7|chr10 (67149122-67148189)
               

               
               19-1173, gnl|Mm7|chr10 (67149042-67147876)
               

               
               19-1173, gnl|monDom2|scaffold_67 (3142461-3143451)
               

               
               19-1173, gnl|oryCun1|scaffold_208911 (43203-44056)
               

               
               19-1173, gnl|panTro1|chr8 (65071778-65072717)
               

               
               19-1173, gnl|rheMac2|chr9 (74452644-74451702)
               

               
               19-1173, gnl|rn3|chr20 (21894175-21895044)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)

	202-312, - strand, RNAz p=0.727415
	750-864, - strand, RNAz p=0.971891
	762-863, - strand, RNAz p=0.995298
	904-1173, - strand, RNAz p=0.962345

	19-1173, gnl\|bosTau2\|chr28 (13113024-13114194)
	19-1173, gnl\|canFam2\|chr4 (17907254-17908174)
	19-1173, gnl\|dasNov1\|scaffold_2201 (6430-5531)
	19-1173, gnl\|echTel1\|scaffold_316943 (2699-3610)
	19-1173, gnl\|hg17\|chr10 (64237616-64238562)
	19-1173, gnl\|Hg17\|chr10 (64237698-64239208)
	19-1173, gnl\|loxAfr1\|scaffold_5489 (84378-83444)
	19-1173, gnl\|mm7\|chr10 (67149122-67148189)
	19-1173, gnl\|Mm7\|chr10 (67149042-67147876)
	19-1173, gnl\|monDom2\|scaffold_67 (3142461-3143451)
	19-1173, gnl\|oryCun1\|scaffold_208911 (43203-44056)
	19-1173, gnl\|panTro1\|chr8 (65071778-65072717)
	19-1173, gnl\|rheMac2\|chr9 (74452644-74451702)
	19-1173, gnl\|rn3\|chr20 (21894175-21895044)

	fce (0.271592)
	mgp (0.230681)
	spc (0.226732)
	ill (0.175593)
	sin (0.174948)
	fhi (0.169578)
	fat (0.147427)
	spl (0.143184)
	ssp (0.13552)
	lyg (0.133103)