Ss1.1-Pig4-TMW8049I21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATATCTGCCAGTTTGGCGCAGAATGTGATGAAGATGCTGAAGATGTCTGGTGTGTGTGCA ACATTGACTGTTCTCAAACCAACTTCAATCCCCTCTGTGCTTCTGATGGGAAATCCTACG ATAATGCATGTCAAATCAAAGAAGCATCATGTCAGAAACAGGAGAAAATTGAAGTCATGT CATTGGGTCGATGTCAAGATAACACAACTACGACTACTAAATCTGAAGATGGGCATTATG CAAGAACAGATTATGCAGAGAATGCTAACAAATTAGAAGAAAGTGCCAGAGAACACCACA TCCCTTGCCCAGAACATTACAATGGCTTCTGCATGCACGGGAAGTGTGAACATTCTATCA ATATGCAGGAGCCATCTTGCAGGTGTGATGCTGGTTATACTGGGCAACACTGTGAAAAAA AGGACTACAGCGTACTCTACGTTGTTCCCGGCCCTGTTCGATTTCAGTACGTCTTAATTG CAGCTGTGATTGGAACAATTCAGATTGCTGTCATCTGTGTGGTGGTCCTCTGCATCACAA GGAAATGCCCCAGAAGCAACAGAATTCACAGACAGAAGCAAAATACAGGGCACTACAGTT CAGACAACACAACAAGAGCGTCCACGAGGTTAATCTAAAGGGAGCATGTTGCACAGTGGC CGGACTACCGAGAGCTTGGACTACACAATACAGTATTATAGACAAAAGAATAAGACAAGA GATCTACACATGTTGCCTTGCATTTGTGGTAATCTACACCAATGAAAACATGTACTACAG CTATATTTGATTATGTATGGATATATTTGAAATAGTATACATTGTCTTGATGTTTTTTCT GTAATGTAAATAAACTATTTATATCACACAATATAGTTTTTTTCTTTCCCATGTATTTGT TATATATAATAAATACTCAGTGATGAGAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATATCTGCCAGTTTGGCGCAGAATGTGATGAAGATGCTGAAGATGTCTGGTGTGTGTGCA ACATTGACTGTTCTCAAACCAACTTCAATCCCCTCTGTGCTTCTGATGGGAAATCCTACG ATAATGCATGTCAAATCAAAGAAGCATCATGTCAGAAACAGGAGAAAATTGAAGTCATGT CATTGGGTCGATGTCAAGATAACACAACTACGACTACTAAATCTGAAGATGGGCATTATG CAAGAACAGATTATGCAGAGAATGCTAACAAATTAGAAGAAAGTGCCAGAGAACACCACA TCCCTTGCCCAGAACATTACAATGGCTTCTGCATGCACGGGAAGTGTGAACATTCTATCA ATATGCAGGAGCCATCTTGCAGGTGTGATGCTGGTTATACTGGGCAACACTGTGAAAAAA AGGACTACAGCGTACTCTACGTTGTTCCCGGCCCTGTTCGATTTCAGTACGTCTTAATTG CAGCTGTGATTGGAACAATTCAGATTGCTGTCATCTGTGTGGTGGTCCTCTGCATCACAA GGAAATGCCCCAGAAGCAACAGAATTCACAGACAGAAGCAAAATACAGGGCACTACAGTT CAGACAACACAACAAGAGCGTCCACGAGGTTAATCTAAAGGGAGCATGTTGCACAGTGGC CGGACTACCGAGAGCTTGGACTACACAATACAGTATTATAGACAAAAGAATAAGACAAGA GATCTACACATGTTGCCTTGCATTTGTGGTAATCTACACCAATGAAAACATGTACTACAG CTATATTTGATTATGTATGGATATATTTGAAATAGTATACATTGTCTTGATGTTTTTTCT GTAATGTAAATAAACTATTTATATCACACAATATAGTTTTTTTCTTTCCCATGTATTTGT TATATATAATAAATACTCAGTGATGAGAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 256-384, - strand, RNAz p=0.967841 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 256-384, - strand, RNAz p=0.967841 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 49-205, gnl|bosTau2|chr2 (48223855-48224011) | |
| 49-205, gnl|Hg17|chr2 (192689441-192689285) | |
| 49-205, gnl|Mm7|chr1 (51365714-51365870) | |
| 256-384, gnl|bosTau2|chr2 (48275986-48276114) | |
| 256-384, gnl|canFam2|chr37 (5420084-5420191) | |
| 256-384, gnl|danRer3|chr7 (50616864-50616757) | |
| 256-384, gnl|dasNov1|scaffold_2111 (4562-4669) | |
| 256-384, gnl|echTel1|scaffold_309874 (45120-45013) | |
| 256-384, gnl|fr1|chrUn (26512799-26512899) | |
| 256-384, gnl|galGal2|chr7 (9068844-9068951) | |
| 256-384, gnl|hg17|chr2 (192646485-192646592) | |
| 256-384, gnl|Hg17|chr2 (192646613-192646485) | |
| 256-384, gnl|loxAfr1|scaffold_46582 (6201-6091) | |
| 256-384, gnl|mm7|chr1 (51413951-51413844) | |
| 256-384, gnl|Mm7|chr1 (51413821-51413949) | |
| 256-384, gnl|monDom2|scaffold_2 (98225493-98225600) | |
| 256-384, gnl|oryCun1|scaffold_202824 (166475-166582) | |
| 256-384, gnl|panTro1|chr13_random (23024190-23024083) | |
| 256-384, gnl|rheMac2|chr12 (55706367-55706474) | |
| 256-384, gnl|rn3|chr9 (47527324-47527431) | |
| 256-384, gnl|tetNig1|chr2 (16420303-16420216) | |
| 540-933, gnl|bosTau2|chr2 (48280574-48280966) | |
| 540-933, gnl|Hg17|chr2 (192640641-192640249) | |
| 540-933, gnl|Mm7|chr1 (51418955-51419345) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 49-205, gnl|bosTau2|chr2 (48223855-48224011) | |
| 49-205, gnl|Hg17|chr2 (192689441-192689285) | |
| 49-205, gnl|Mm7|chr1 (51365714-51365870) | |
| 256-384, gnl|bosTau2|chr2 (48275986-48276114) | |
| 256-384, gnl|canFam2|chr37 (5420084-5420191) | |
| 256-384, gnl|danRer3|chr7 (50616864-50616757) | |
| 256-384, gnl|dasNov1|scaffold_2111 (4562-4669) | |
| 256-384, gnl|echTel1|scaffold_309874 (45120-45013) | |
| 256-384, gnl|fr1|chrUn (26512799-26512899) | |
| 256-384, gnl|galGal2|chr7 (9068844-9068951) | |
| 256-384, gnl|hg17|chr2 (192646485-192646592) | |
| 256-384, gnl|Hg17|chr2 (192646613-192646485) | |
| 256-384, gnl|loxAfr1|scaffold_46582 (6201-6091) | |
| 256-384, gnl|mm7|chr1 (51413951-51413844) | |
| 256-384, gnl|Mm7|chr1 (51413821-51413949) | |
| 256-384, gnl|monDom2|scaffold_2 (98225493-98225600) | |
| 256-384, gnl|oryCun1|scaffold_202824 (166475-166582) | |
| 256-384, gnl|panTro1|chr13_random (23024190-23024083) | |
| 256-384, gnl|rheMac2|chr12 (55706367-55706474) | |
| 256-384, gnl|rn3|chr9 (47527324-47527431) | |
| 256-384, gnl|tetNig1|chr2 (16420303-16420216) | |
| 540-933, gnl|bosTau2|chr2 (48280574-48280966) | |
| 540-933, gnl|Hg17|chr2 (192640641-192640249) | |
| 540-933, gnl|Mm7|chr1 (51418955-51419345) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cbe (0.956938) | |
| fco (0.471624) | |
| sug (0.381874) | |
| spc (0.340097) | |
| lun (0.300978) | |
| cte (0.29274) | |
| aor (0.195274) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.956938) | |
| fco (0.471624) | |
| sug (0.381874) | |
| spc (0.340097) | |
| lun (0.300978) | |
| cte (0.29274) | |
| aor (0.195274) |