Non-Coding RNA Search

Ss1.1-Pig4-TMW8049I22.3

Sequence:


               
               GCTAGGTTGCTGGAGGAAACTTGAGGGCTAGTTTTTGGCTAGAAATACTTGGAACCGGTT
CCAGGGTCTTCGAACTCATCCTCCCTACAAATATGCATTCAAGGTCACAAATAGGTGGAC
CAGTTCCAGGCTGGTCAAGTGTGTACAGGGACTGCGGCTCTCTGCATATAGCTCAGAATT
GTCCCAGGACCGATGTCCCAAGTCTGGAGTCTTCATAAGTAGGCAAAGAATGTCTTCAGT
GCCTCTGCGTCTGTCTCCACTACTCATCTTAGGACCCCCATCAGCTACCCACCCTGCGTC
AGACAGCCACAGTACCCTCACTTTCTCCCAGTCCTTTCAAATCCTGCTCTCAGGAAAGCA
CCTGCCACTGACTCCTTCACACTAGAGTGTAAATGACTGATAGGAGGAACATGTTACTTT
TTTCAGAAACATTGGCTTTTTAACAAGGACACAGCAGAGCCTTAATCCCAAGGGGGAAAG
TCTGTGGAACTACCGGGGCTAAGTTGGGGGGGAGGGGAGCAGGTAGGGGTGGATGAACTT
CCTGGGTGGAAAGGGACTCCTTGATACTCCTTAAATTAAGACTCAGTGCCCTTGGACGGT
GGCCTTCCAAAGCCAAAGCAATATGTTTCTGTCTCTGCTCCCCTGCTCCCCACCCCCACC
CCCAAACGTAGTTCAAGTGCATCTATGCCTGTGCATTTTGTACGGTAGCATTTCACCCAT
TTTGGAATGTAATTCTTATCCCGGCTAAATGTGTTTCCTGGTCTTTCTTCGAGGCAAACC
CTGAACAACACAATCTTACCTGTTTTGAGGGGTACTTATTAAGTAGGTTATTTTGAACAC
CTCTTTAAATACAGCTAGAAAATAAACCAATTTGTAAAGCCACATTTGCATATGATGCCA
GCCACAAAACTTTGTACATCTCCAGAATCCCAGGTATGCCTCACCCATTTGCCCGCCTTG
AATCAACTCATCTGTTACAACCTTGCGTCAAACTTCAGCTTCCTACACACAATAAAACAA
GGAACAAAGGGTTCGACTGCTCCTTTGTCCTCAGACATTTAGGAATATAAAATACCTATT
TTTATGCTGAGATATTTATACAGGTTTATTAATCCAAGCGCAACTAACTGGAGGCATGTG
CCCTACAACACATTTTGATAGATGAGTCATGCTTCTGGGTAAAGGCAAGCCCCAAACTAC
TTATCTTTTGCAGTCTCTCTGGGTCAGTAAGAGGAAAAAAAAAAAAAAAAAAATCATATG
CTTAAGAAGTGGGACTGTAAATATGTATATTTAACTTTGTATATCCCATGTACCTACTTT
GTATAGAAAAATCATTTTAAAAATTTGAACCGAAGCAGAGGTAAATAAGGAAGTCAGGAA
GGTTTTTTTCTTTTGCCTATTTAAATGAAGGAATTCCAAACTGACCTGCAGGTTTTTAGC
ACAAAAATAGCCATGGTAAAGTGTTACAATAATCATTCTTTCTGGGAGAGAAGGTAACTT
CTCAATTACAGTAGATTTTCTTATTATTTGACTTTTTTTGCAGTCCTATTTACCTGCAGT
AGTATCAAGTCCTATTGCTAGAATAGGTTACTACAAAAAAAGACATCCTGAAAGAAAAAT
AACGGACATTCTATATAACCAGTTAATTTAAAGTATTGCCATTTAAATTACACACCAAGA
GCATGTACTATGCACAGATTTTCCGTTCATTATTTTTTTTCTTGCAGTGGATCGATTTGA
CAAATAGATGTTGAATTATTCCATTTGCTGTATATATTATTTAATAAACTTTATTCAGAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTAGGTTGCTGGAGGAAACTTGAGGGCTAGTTTTTGGCTAGAAATACTTGGAACCGGTT
CCAGGGTCTTCGAACTCATCCTCCCTACAAATATGCATTCAAGGTCACAAATAGGTGGAC
CAGTTCCAGGCTGGTCAAGTGTGTACAGGGACTGCGGCTCTCTGCATATAGCTCAGAATT
GTCCCAGGACCGATGTCCCAAGTCTGGAGTCTTCATAAGTAGGCAAAGAATGTCTTCAGT
GCCTCTGCGTCTGTCTCCACTACTCATCTTAGGACCCCCATCAGCTACCCACCCTGCGTC
AGACAGCCACAGTACCCTCACTTTCTCCCAGTCCTTTCAAATCCTGCTCTCAGGAAAGCA
CCTGCCACTGACTCCTTCACACTAGAGTGTAAATGACTGATAGGAGGAACATGTTACTTT
TTTCAGAAACATTGGCTTTTTAACAAGGACACAGCAGAGCCTTAATCCCAAGGGGGAAAG
TCTGTGGAACTACCGGGGCTAAGTTGGGGGGGAGGGGAGCAGGTAGGGGTGGATGAACTT
CCTGGGTGGAAAGGGACTCCTTGATACTCCTTAAATTAAGACTCAGTGCCCTTGGACGGT
GGCCTTCCAAAGCCAAAGCAATATGTTTCTGTCTCTGCTCCCCTGCTCCCCACCCCCACC
CCCAAACGTAGTTCAAGTGCATCTATGCCTGTGCATTTTGTACGGTAGCATTTCACCCAT
TTTGGAATGTAATTCTTATCCCGGCTAAATGTGTTTCCTGGTCTTTCTTCGAGGCAAACC
CTGAACAACACAATCTTACCTGTTTTGAGGGGTACTTATTAAGTAGGTTATTTTGAACAC
CTCTTTAAATACAGCTAGAAAATAAACCAATTTGTAAAGCCACATTTGCATATGATGCCA
GCCACAAAACTTTGTACATCTCCAGAATCCCAGGTATGCCTCACCCATTTGCCCGCCTTG
AATCAACTCATCTGTTACAACCTTGCGTCAAACTTCAGCTTCCTACACACAATAAAACAA
GGAACAAAGGGTTCGACTGCTCCTTTGTCCTCAGACATTTAGGAATATAAAATACCTATT
TTTATGCTGAGATATTTATACAGGTTTATTAATCCAAGCGCAACTAACTGGAGGCATGTG
CCCTACAACACATTTTGATAGATGAGTCATGCTTCTGGGTAAAGGCAAGCCCCAAACTAC
TTATCTTTTGCAGTCTCTCTGGGTCAGTAAGAGGAAAAAAAAAAAAAAAAAAATCATATG
CTTAAGAAGTGGGACTGTAAATATGTATATTTAACTTTGTATATCCCATGTACCTACTTT
GTATAGAAAAATCATTTTAAAAATTTGAACCGAAGCAGAGGTAAATAAGGAAGTCAGGAA
GGTTTTTTTCTTTTGCCTATTTAAATGAAGGAATTCCAAACTGACCTGCAGGTTTTTAGC
ACAAAAATAGCCATGGTAAAGTGTTACAATAATCATTCTTTCTGGGAGAGAAGGTAACTT
CTCAATTACAGTAGATTTTCTTATTATTTGACTTTTTTTGCAGTCCTATTTACCTGCAGT
AGTATCAAGTCCTATTGCTAGAATAGGTTACTACAAAAAAAGACATCCTGAAAGAAAAAT
AACGGACATTCTATATAACCAGTTAATTTAAAGTATTGCCATTTAAATTACACACCAAGA
GCATGTACTATGCACAGATTTTCCGTTCATTATTTTTTTTCTTGCAGTGGATCGATTTGA
CAAATAGATGTTGAATTATTCCATTTGCTGTATATATTATTTAATAAACTTTATTCAGAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               335-450, - strand, RNAz p=0.617833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-450, - strand, RNAz p=0.617833

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1800, gnl|bosTau2|chr26 (10707522-10705748)
               

               
               2-1800, gnl|Hg17|chr10 (97063341-97061530)
               

               
               2-1800, gnl|Mm7|chr19 (40187491-40185838)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1800, gnl|bosTau2|chr26 (10707522-10705748)
               

               
               2-1800, gnl|Hg17|chr10 (97063341-97061530)
               

               
               2-1800, gnl|Mm7|chr19 (40187491-40185838)

Expressed library(ies): 34 entry(ies)

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Expressed library(ies): 34 entry(ies)

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               bla (1.74086)
               

               
               hea (1.02249)
               

               
               bfe (0.899146)
               

               
               lin (0.728014)
               

               
               hlv (0.696282)
               

               
               gul (0.532765)
               

               
               isp (0.451128)
               

               
               fat (0.442282)
               

               
               sag (0.36543)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (1.74086)
               

               
               hea (1.02249)
               

               
               bfe (0.899146)
               

               
               lin (0.728014)
               

               
               hlv (0.696282)
               

               
               gul (0.532765)
               

               
               isp (0.451128)
               

               
               fat (0.442282)
               

               
               sag (0.36543)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               tbr (0.308356)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	2-1800, gnl\|bosTau2\|chr26 (10707522-10705748)
	2-1800, gnl\|Hg17\|chr10 (97063341-97061530)
	2-1800, gnl\|Mm7\|chr19 (40187491-40185838)

	bla (1.74086)
	hea (1.02249)
	bfe (0.899146)
	lin (0.728014)
	hlv (0.696282)
	gul (0.532765)
	isp (0.451128)
	fat (0.442282)
	sag (0.36543)
	vin (0.332557)
	fco (0.314416)
	tbr (0.308356)
	ski (0.29347)
	liv (0.292569)
	hyp (0.285673)
	ssp (0.271039)
	mgp (0.230681)
	ecc (0.23007)
	ldo (0.194005)
	mgm (0.180343)
	sin (0.174948)
	fhi (0.169578)
	csp (0.161186)
	mga (0.160205)
	spl (0.143184)
	pty (0.142714)
	ute (0.132784)
	cov (0.132153)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	tra (0.123092)
	jca (0.11396)
	spc (0.113366)