Non-Coding RNA Search

Ss1.1-Pig4-TMW8049J02.3

Sequence:


               
               GGCTTTGCCGAGCCCCAGGTCCCGTGTATGTGTGTGGGCAGGTGGCTCATTTTCCCGCTG
ACAGATTGCCATCCCTGTTGTCGCCCCTCCTCAGCCACCGCTGCATTCCTGGTGTCGCTG
TACATTAAGGACATCTGGCTGGGGGCCCAGCGCCCTGAGAGCCTCTTGACCCACGTCCGG
ATGGTCCTCGATGCCACAGAGGACCGGCAGGCTGGTGACGAGGAGCCCATCGTCAGGCTC
TGCAGGGACCTCACCGCGGTGCCCCCGACGCTTGACCCCCTGCCAGCCTGCGCCTCTGGC
TCCAGGTTGTAGGAGTTGGGTTGAGTCACGGAGGCTCTGCGAGATGATGAGCTCTGTGTA
TTGACTGGGTGTCCTGACCAGAAAAGTCGGCTCAAGGGACCGCGTGTGAGAAGTGGTCAG
AGTTACAGTGGGTTGGGGACCTTCGAGCCCTGAGCCCCGCTCAGGGAAGACCCTTCCTCT
TAGAGGTTCACTGTTCCTCAGAAAAATACCTCAAATTGAGGTAGCACTTCTGAGCGCTTA
AGGGATTCATGGATACTAAAGCTGCAGTGTTGAAAAATCTATCAGAGATGTTTCAGGTTT
TCTTTTTATAAGAAGTCCCAGCTAAGCTTCGTGTAACTTTTTAAAGAAATAAGCCCTGCC
AGTATTGTGTTAATTATTTTCTTAAATAAAAGGATGTTAACACTGAATCCTTAAAGTATA
AAACTGATTTGACTTCTGCTTTGGAAAGACAGCCTGTATTTTCTAAAATTGTGTTTCAAA
AAGGGGATTGTAAATTTCATAACTCATTAATAAATGTCTATTTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTGCCGAGCCCCAGGTCCCGTGTATGTGTGTGGGCAGGTGGCTCATTTTCCCGCTG
ACAGATTGCCATCCCTGTTGTCGCCCCTCCTCAGCCACCGCTGCATTCCTGGTGTCGCTG
TACATTAAGGACATCTGGCTGGGGGCCCAGCGCCCTGAGAGCCTCTTGACCCACGTCCGG
ATGGTCCTCGATGCCACAGAGGACCGGCAGGCTGGTGACGAGGAGCCCATCGTCAGGCTC
TGCAGGGACCTCACCGCGGTGCCCCCGACGCTTGACCCCCTGCCAGCCTGCGCCTCTGGC
TCCAGGTTGTAGGAGTTGGGTTGAGTCACGGAGGCTCTGCGAGATGATGAGCTCTGTGTA
TTGACTGGGTGTCCTGACCAGAAAAGTCGGCTCAAGGGACCGCGTGTGAGAAGTGGTCAG
AGTTACAGTGGGTTGGGGACCTTCGAGCCCTGAGCCCCGCTCAGGGAAGACCCTTCCTCT
TAGAGGTTCACTGTTCCTCAGAAAAATACCTCAAATTGAGGTAGCACTTCTGAGCGCTTA
AGGGATTCATGGATACTAAAGCTGCAGTGTTGAAAAATCTATCAGAGATGTTTCAGGTTT
TCTTTTTATAAGAAGTCCCAGCTAAGCTTCGTGTAACTTTTTAAAGAAATAAGCCCTGCC
AGTATTGTGTTAATTATTTTCTTAAATAAAAGGATGTTAACACTGAATCCTTAAAGTATA
AAACTGATTTGACTTCTGCTTTGGAAAGACAGCCTGTATTTTCTAAAATTGTGTTTCAAA
AAGGGGATTGTAAATTTCATAACTCATTAATAAATGTCTATTTTTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               421-533, - strand, RNAz p=0.997394

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-533, - strand, RNAz p=0.997394

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               443-533, AR058C12LN05ABC12T Porcine Lymph node cDNA library, Cot 5 Sus 
(gb|BI245076.1|), blast E-value=4.00001e-41, identity=98.9%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               443-533, AR058C12LN05ABC12T Porcine Lymph node cDNA library, Cot 5 Sus 
(gb|BI245076.1|), blast E-value=4.00001e-41, identity=98.9%

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               9-327, gnl|bosTau2|chr1 (70815-70497)
               

               
               9-327, gnl|Hg17|chr21 (32609378-32609022)
               

               
               9-327, gnl|Mm7|chr16 (90802179-90801853)
               


               
               365-828, gnl|bosTau2|chr1 (70419-69966)
               

               
               365-828, gnl|Hg17|chr21 (32608937-32608137)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-327, gnl|bosTau2|chr1 (70815-70497)
               

               
               9-327, gnl|Hg17|chr21 (32609378-32609022)
               

               
               9-327, gnl|Mm7|chr16 (90802179-90801853)
               


               
               365-828, gnl|bosTau2|chr1 (70419-69966)
               

               
               365-828, gnl|Hg17|chr21 (32608937-32608137)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               bla (0.124347)

	9-327, gnl\|bosTau2\|chr1 (70815-70497)
	9-327, gnl\|Hg17\|chr21 (32609378-32609022)
	9-327, gnl\|Mm7\|chr16 (90802179-90801853)

	365-828, gnl\|bosTau2\|chr1 (70419-69966)
	365-828, gnl\|Hg17\|chr21 (32608937-32608137)