Ss1.1-Pig4-TMW8049J11.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAATGGCCCTGAGGTCACCATGCTCAAGGATGCCCAGCATTATGGGGGCTGGGAGCACCG AGACCTGCACAACATCTATGGCTTCTACGTGCACATGGCAACTGCTGACGGGCTGGTGCT GCGCTCTGGGGGTGTAGAACGGCCCTTTGTCCTGAGCAGGGCTTTCTTCGCTGGCTCCCA GCGCTTTGGAGCCGTGTGGACTGGGGACAACACTGCTGAATGGGACCATTTGAAGATCTC TATCCCTATGTGTCTCAGCTTGGGGCTGGTGGGACTTTCCTTCTGTGGAGCGGATGTGGG TGGCTTCTTCAAAAATCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAGATGGGTGCTTA CCAGCCATTCTTCCGGGCACATGCCCATTTGGACACTGGTCGGCGAGAGCCGTGGCTGTT ACCGACTCAGTACCAGGACATGATCCGAGATGCCCTGGGCCAGAGATACTCCTTACTGCC CTTCTGGTACACTCTCTTCTATCAGGCCCATCGCGAAGGGGTTCCTGTCATGAGGGCCCT GTGGGTGCATTATCCTCAGGACGTGACGACCTTCAGTATAGATGACGAGTTCCTGCTTGG GGATGCACTGCTGGTTCACCCTGTAACAGACTCTGAGGCACATGGCGTGCAGGTCTATCT GCCTGGCCAAGGGGAGGTGTGGTACGATGTTCACAGCTACCAGAAGTATCATGGTCCGCA GACCCTGTACCTGCCTGTAACTCTAAGCAGCATCCCTGTGTTCCAGCGCGGAGGGACCAT TGTGCCCCGATGGATGCGAGTGCGGCGTTCCTCAGACTGCATGAAGGACGACCCCATCAC TCTCTTCGTTGCACTCAGTCCCCAGGGTACAGCCCAAGGAGAGCTCTTTCTCGACGATGG GCACACATTCAACTATCAGACTGGCCATGAGTTCCTGCTGCGTCGATTCTCATTCTCTGG CAACACCCTTGTCTCCAGCTCAGCAGACTCCAAAGGCCACTTTGAGACACCTGTCTGGAT TGAGCGGGTGGTGATAATAGGGGCTGGAAAGCCAGCAACTGTGGTACTCCAGACAAAAGG ATCTCCTGAAAGCCGCCTGTCCTTCCAGCATGACCCTGAGACCTCTGTGTTGATCCTGCG CAAGCCTGGCGTCAATGTGGCATCCGACTGGAGCATTCACCTGCGATAACCCATGGGATG TTGGGATGGGGTGCGGTGGTGATTGAGAGTTACACTTCCTTCTGCCTTGGAGTTTGACCT TCCCCAGACTTCACCTTTCTTATGCCGACGTCTGGGCAGGGTGAGAGGGCTGTCCCTGGG CTTGAATTCCTTTTGTGACCTGATCTCTCCCACCCCACTGACACCAGATCTCCCTTCATC TCCCAGTACTCTGTTGCTCGAACTGGAGCACAATCACCTGTGAAGACCTGGGGACCATAG GGCCCTTGCTTTCCCTCCTCTTTTCTTTCTTTTGGGGGCCCTGAATCTCCTCCAGACCCT CTCCATTCATGTCTCTTGTGTGTTGATGCCATTTCTTGGAAGAAGATAAGGGCAGTGAGC TTTAGGGCTGCTTTTCTCCTTCCCCTTCCCTCCCCACCGAACTGCTCTCCCTCCTTTTAT TTCTTCCTCTGTCAGCCCTTCCCTTTTAATGCCCCATCGATACACTGGGACCACCCCTTA CCTGATGAGGGATGAATGGATCACAGGAGTGAGGTTGCTGGAAAACGTCCTCTTCCCTGG CTCCCAACTTTTCCTCTCCCCGCTTCTTTCTAGAGCTGCTGCAGTTCTGACAGGGGCAGT TCTACCTCCCCTGTCCTTTGGGGGAAGGAAGTTTCCACTCCCTGAGAGGGGATAAACAAA ACTTCTCTTGCCTCCTAAAATTTTGTCCCGTTGAGGGGCATTCAAGATGGAGAAATCAGT TGTGGTTTCATCGAATCACGGTCATCTGTATTTATTGCTGGGAGAAGGCTGAGGGTGGGG GAGAGATGATCATGTGCGCCCAGGGGTGGCCCAAAGCCCTGGGTAGGGGGTGGGGTGGGC AAGGACTAACTGGGGGCGAGGGGGAATATTTGTGGGAATTTTTTTTACTTCCTCTTGGCC TCCAGCCGTGACAGGTTTTGATAAAAGGAGAAACAATAAAAGAGATAAACCATAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAATGGCCCTGAGGTCACCATGCTCAAGGATGCCCAGCATTATGGGGGCTGGGAGCACCG AGACCTGCACAACATCTATGGCTTCTACGTGCACATGGCAACTGCTGACGGGCTGGTGCT GCGCTCTGGGGGTGTAGAACGGCCCTTTGTCCTGAGCAGGGCTTTCTTCGCTGGCTCCCA GCGCTTTGGAGCCGTGTGGACTGGGGACAACACTGCTGAATGGGACCATTTGAAGATCTC TATCCCTATGTGTCTCAGCTTGGGGCTGGTGGGACTTTCCTTCTGTGGAGCGGATGTGGG TGGCTTCTTCAAAAATCCAGAGCCAGAGCTGCTTGTGCGCTGGTACCAGATGGGTGCTTA CCAGCCATTCTTCCGGGCACATGCCCATTTGGACACTGGTCGGCGAGAGCCGTGGCTGTT ACCGACTCAGTACCAGGACATGATCCGAGATGCCCTGGGCCAGAGATACTCCTTACTGCC CTTCTGGTACACTCTCTTCTATCAGGCCCATCGCGAAGGGGTTCCTGTCATGAGGGCCCT GTGGGTGCATTATCCTCAGGACGTGACGACCTTCAGTATAGATGACGAGTTCCTGCTTGG GGATGCACTGCTGGTTCACCCTGTAACAGACTCTGAGGCACATGGCGTGCAGGTCTATCT GCCTGGCCAAGGGGAGGTGTGGTACGATGTTCACAGCTACCAGAAGTATCATGGTCCGCA GACCCTGTACCTGCCTGTAACTCTAAGCAGCATCCCTGTGTTCCAGCGCGGAGGGACCAT TGTGCCCCGATGGATGCGAGTGCGGCGTTCCTCAGACTGCATGAAGGACGACCCCATCAC TCTCTTCGTTGCACTCAGTCCCCAGGGTACAGCCCAAGGAGAGCTCTTTCTCGACGATGG GCACACATTCAACTATCAGACTGGCCATGAGTTCCTGCTGCGTCGATTCTCATTCTCTGG CAACACCCTTGTCTCCAGCTCAGCAGACTCCAAAGGCCACTTTGAGACACCTGTCTGGAT TGAGCGGGTGGTGATAATAGGGGCTGGAAAGCCAGCAACTGTGGTACTCCAGACAAAAGG ATCTCCTGAAAGCCGCCTGTCCTTCCAGCATGACCCTGAGACCTCTGTGTTGATCCTGCG CAAGCCTGGCGTCAATGTGGCATCCGACTGGAGCATTCACCTGCGATAACCCATGGGATG TTGGGATGGGGTGCGGTGGTGATTGAGAGTTACACTTCCTTCTGCCTTGGAGTTTGACCT TCCCCAGACTTCACCTTTCTTATGCCGACGTCTGGGCAGGGTGAGAGGGCTGTCCCTGGG CTTGAATTCCTTTTGTGACCTGATCTCTCCCACCCCACTGACACCAGATCTCCCTTCATC TCCCAGTACTCTGTTGCTCGAACTGGAGCACAATCACCTGTGAAGACCTGGGGACCATAG GGCCCTTGCTTTCCCTCCTCTTTTCTTTCTTTTGGGGGCCCTGAATCTCCTCCAGACCCT CTCCATTCATGTCTCTTGTGTGTTGATGCCATTTCTTGGAAGAAGATAAGGGCAGTGAGC TTTAGGGCTGCTTTTCTCCTTCCCCTTCCCTCCCCACCGAACTGCTCTCCCTCCTTTTAT TTCTTCCTCTGTCAGCCCTTCCCTTTTAATGCCCCATCGATACACTGGGACCACCCCTTA CCTGATGAGGGATGAATGGATCACAGGAGTGAGGTTGCTGGAAAACGTCCTCTTCCCTGG CTCCCAACTTTTCCTCTCCCCGCTTCTTTCTAGAGCTGCTGCAGTTCTGACAGGGGCAGT TCTACCTCCCCTGTCCTTTGGGGGAAGGAAGTTTCCACTCCCTGAGAGGGGATAAACAAA ACTTCTCTTGCCTCCTAAAATTTTGTCCCGTTGAGGGGCATTCAAGATGGAGAAATCAGT TGTGGTTTCATCGAATCACGGTCATCTGTATTTATTGCTGGGAGAAGGCTGAGGGTGGGG GAGAGATGATCATGTGCGCCCAGGGGTGGCCCAAAGCCCTGGGTAGGGGGTGGGGTGGGC AAGGACTAACTGGGGGCGAGGGGGAATATTTGTGGGAATTTTTTTTACTTCCTCTTGGCC TCCAGCCGTGACAGGTTTTGATAAAAGGAGAAACAATAAAAGAGATAAACCATAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 326-445, + strand, RNAz p=0.513398 | |
| 1221-1322, - strand, RNAz p=0.792365 | |
| 1397-1516, - strand, RNAz p=0.999287 | |
| 1713-1906, + strand, RNAz p=0.999953 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 326-445, + strand, RNAz p=0.513398 | |
| 1221-1322, - strand, RNAz p=0.792365 | |
| 1397-1516, - strand, RNAz p=0.999287 | |
| 1713-1906, + strand, RNAz p=0.999953 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC065266, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 289-501, gnl|bosTau2|chr10 (17152876-17153088) | |
| 289-501, gnl|canFam2|chr30 (12297168-12297348) | |
| 289-501, gnl|danRer3|chrUn (70673275-70673095) | |
| 289-501, gnl|dasNov1|scaffold_53852 (1313-1133) | |
| 289-501, gnl|echTel1|scaffold_324353 (42459-42639) | |
| 289-501, gnl|fr1|chrUn (181875835-181875656) | |
| 289-501, gnl|galGal2|chr5 (22893072-22893252) | |
| 289-501, gnl|hg17|chr15 (40419155-40419335) | |
| 289-501, gnl|Hg17|chr15 (40419157-40419369) | |
| 289-501, gnl|loxAfr1|scaffold_7868 (44235-44415) | |
| 289-501, gnl|mm7|chr2 (120187144-120187324) | |
| 289-501, gnl|Mm7|chr2 (120187146-120187358) | |
| 289-501, gnl|monDom2|scaffold_53 (12239637-12239457) | |
| 289-501, gnl|oryCun1|scaffold_204911 (211863-212043) | |
| 289-501, gnl|panTro1|chr16 (40399088-40399268) | |
| 289-501, gnl|rheMac2|chr7 (20764523-20764703) | |
| 289-501, gnl|rn3|chr3 (106826921-106827101) | |
| 289-501, gnl|tetNig1|chr10 (11773826-11773997) | |
| 289-501, gnl|xenTro1|scaffold_271 (433712-433892) | |
| 840-986, gnl|bosTau2|chr29 (32072849-32072702) | |
| 840-986, gnl|Hg17|chr11 (62150522-62150376) | |
| 840-986, gnl|Mm7|chr19 (8595298-8595440) | |
| 1078-2156, gnl|bosTau2|chr29 (32072064-32070976) | |
| 1078-2156, gnl|Hg17|chr11 (62149974-62148877) | |
| 1078-2156, gnl|Mm7|chr19 (8595785-8596828) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 289-501, gnl|bosTau2|chr10 (17152876-17153088) | |
| 289-501, gnl|canFam2|chr30 (12297168-12297348) | |
| 289-501, gnl|danRer3|chrUn (70673275-70673095) | |
| 289-501, gnl|dasNov1|scaffold_53852 (1313-1133) | |
| 289-501, gnl|echTel1|scaffold_324353 (42459-42639) | |
| 289-501, gnl|fr1|chrUn (181875835-181875656) | |
| 289-501, gnl|galGal2|chr5 (22893072-22893252) | |
| 289-501, gnl|hg17|chr15 (40419155-40419335) | |
| 289-501, gnl|Hg17|chr15 (40419157-40419369) | |
| 289-501, gnl|loxAfr1|scaffold_7868 (44235-44415) | |
| 289-501, gnl|mm7|chr2 (120187144-120187324) | |
| 289-501, gnl|Mm7|chr2 (120187146-120187358) | |
| 289-501, gnl|monDom2|scaffold_53 (12239637-12239457) | |
| 289-501, gnl|oryCun1|scaffold_204911 (211863-212043) | |
| 289-501, gnl|panTro1|chr16 (40399088-40399268) | |
| 289-501, gnl|rheMac2|chr7 (20764523-20764703) | |
| 289-501, gnl|rn3|chr3 (106826921-106827101) | |
| 289-501, gnl|tetNig1|chr10 (11773826-11773997) | |
| 289-501, gnl|xenTro1|scaffold_271 (433712-433892) | |
| 840-986, gnl|bosTau2|chr29 (32072849-32072702) | |
| 840-986, gnl|Hg17|chr11 (62150522-62150376) | |
| 840-986, gnl|Mm7|chr19 (8595298-8595440) | |
| 1078-2156, gnl|bosTau2|chr29 (32072064-32070976) | |
| 1078-2156, gnl|Hg17|chr11 (62149974-62148877) | |
| 1078-2156, gnl|Mm7|chr19 (8595785-8596828) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| fce (0.814775) | |
| ill (0.526778) | |
| cty (0.41632) | |
| ute (0.398353) | |
| cli (0.305623) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cly (0.241284) | |
| eru (0.240096) | |
| col (0.195008) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.814775) | |
| ill (0.526778) | |
| cty (0.41632) | |
| ute (0.398353) | |
| cli (0.305623) | |
| cag (0.302389) | |
| pty (0.285429) | |
| cly (0.241284) | |
| eru (0.240096) | |
| col (0.195008) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |