Ss1.1-Pig4-TMW8049J20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACAGTCGGTCCTCCAGGCCCGATGGGAGAAAGGGGTGCTCCTGGCAATCGTGGTTTTC CAGGCTCTGATGGTTTACCTGGACCAAAGGGGGCTCAAGGAGAGAGAGGTCCTGTAGGTT CTTCAGGACCTAAAGGAGGTCAGGGGGATCCAGGACGTCCAGGCGAACCTGGGCTTCCAG GTGCTCGGGGTCTGACAGGAAATCCTGGTGTTCAAGGTCCTGAAGGAAAACTTGGACCTT TGGGTGCTCCAGGGGAGGATGGCCGGCCAGGGCCTCCAGGCTCCATAGGAATCAGAGGGC AGCCTGGGAGTATGGGTCTTCCAGGCCCCAAAGGTAGCAGTGGTGACCCTGGAAAACCTG GAGAAGCAGGAAATGCTGGTGTTCCTGGGCAGAGGGGAGCTCCTGGAAAAGATGGCGAAG TCGGTCCTTCTGGACCTGTGGGTCCGCCGGGTCTAGCTGGGGAGAGAGGAGAACAGGGCC CTCCAGGCCCCACTGGCTTTCAGGGGCTTCCTGGTCCTCCAGGGCCTCCTGGGGAAGGTG GAAAACCAGGTGATCAGGGTGTTCCTGGAGATCCTGGAGCAGTTGGCCCATTAGGACCTA GAGGAGAACGAGGAAATCCAGGGGAAAGAGGAGAACCAGGAATAACTGGACTTCCTGGTG AGAAGGGAATGGCTGGAGGACATGGTCCTGATGGCCCAAAAGGCAGTCTATGCCCATTTT CGAGGTGAGGAAAATGAAGCATGCAGATGTTAAGTAAATTTCCCAAAG------------ TGATTTGAATCCAGATCATGTACTTATAGAATTGTGTTCTTAATCACTAAATATATCTTA TTGTAACTGTAGAGTTTTACTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACAGTCGGTCCTCCAGGCCCGATGGGAGAAAGGGGTGCTCCTGGCAATCGTGGTTTTC CAGGCTCTGATGGTTTACCTGGACCAAAGGGGGCTCAAGGAGAGAGAGGTCCTGTAGGTT CTTCAGGACCTAAAGGAGGTCAGGGGGATCCAGGACGTCCAGGCGAACCTGGGCTTCCAG GTGCTCGGGGTCTGACAGGAAATCCTGGTGTTCAAGGTCCTGAAGGAAAACTTGGACCTT TGGGTGCTCCAGGGGAGGATGGCCGGCCAGGGCCTCCAGGCTCCATAGGAATCAGAGGGC AGCCTGGGAGTATGGGTCTTCCAGGCCCCAAAGGTAGCAGTGGTGACCCTGGAAAACCTG GAGAAGCAGGAAATGCTGGTGTTCCTGGGCAGAGGGGAGCTCCTGGAAAAGATGGCGAAG TCGGTCCTTCTGGACCTGTGGGTCCGCCGGGTCTAGCTGGGGAGAGAGGAGAACAGGGCC CTCCAGGCCCCACTGGCTTTCAGGGGCTTCCTGGTCCTCCAGGGCCTCCTGGGGAAGGTG GAAAACCAGGTGATCAGGGTGTTCCTGGAGATCCTGGAGCAGTTGGCCCATTAGGACCTA GAGGAGAACGAGGAAATCCAGGGGAAAGAGGAGAACCAGGAATAACTGGACTTCCTGGTG AGAAGGGAATGGCTGGAGGACATGGTCCTGATGGCCCAAAAGGCAGTCTATGCCCATTTT CGAGGTGAGGAAAATGAAGCATGCAGATGTTAAGTAAATTTCCCAAAG------------ TGATTTGAATCCAGATCATGTACTTATAGAATTGTGTTCTTAATCACTAAATATATCTTA TTGTAACTGTAGAGTTTTACTGGA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 56-189, + strand, RNAz p=0.998181 | |
| 242-342, + strand, RNAz p=0.819335 | |
| 603-707, + strand, RNAz p=0.982701 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 56-189, + strand, RNAz p=0.998181 | |
| 242-342, + strand, RNAz p=0.819335 | |
| 603-707, + strand, RNAz p=0.982701 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 603-707, 17000427621730 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN346155.1|), blast E-value=9.00054e-42, identity=96.19% | |
| 603-707, 17000532241480 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN346164.1|), blast E-value=9.00054e-42, identity=96.19% | |
| 603-707, oe26a12.y1 Human keratoconus cornea, unamplified, (od/oe) Homo (gb|CV574573.1|), blast E-value=9.00054e-42, identity=96.19% | |
| 603-707, sh3P0021O17_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, (gb|DY512438.1|), blast E-value=0, identity=98.1% | |
| 603-707, LB02939.CR_J14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351557.1|), blast E-value=0, identity=98.1% | |
| 603-707, LB029112.CR_B22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369904.1|), blast E-value=0, identity=98.1% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 603-707, 17000427621730 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN346155.1|), blast E-value=9.00054e-42, identity=96.19% | |
| 603-707, 17000532241480 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb|CN346164.1|), blast E-value=9.00054e-42, identity=96.19% | |
| 603-707, oe26a12.y1 Human keratoconus cornea, unamplified, (od/oe) Homo (gb|CV574573.1|), blast E-value=9.00054e-42, identity=96.19% | |
| 603-707, sh3P0021O17_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, (gb|DY512438.1|), blast E-value=0, identity=98.1% | |
| 603-707, LB02939.CR_J14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351557.1|), blast E-value=0, identity=98.1% | |
| 603-707, LB029112.CR_B22 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE369904.1|), blast E-value=0, identity=98.1% |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 56-189, gnl|bosTau2|chr2 (3064500-3064633) | |
| 56-189, gnl|canFam2|chr36 (33602494-33602618) | |
| 56-189, gnl|danRer3|chr9 (37407973-37408095) | |
| 56-189, gnl|dasNov1|scaffold_1007 (29101-28977) | |
| 56-189, gnl|echTel1|scaffold_288923 (92628-92506) | |
| 56-189, gnl|fr1|chrUn (211932094-211932201) | |
| 56-189, gnl|galGal2|chr7 (508698-508575) | |
| 56-189, gnl|hg17|chr2 (189754786-189754909) | |
| 56-189, gnl|Hg17|chr2 (189754917-189754788) | |
| 56-189, gnl|loxAfr1|scaffold_4638 (48167-48045) | |
| 56-189, gnl|mm7|chr1 (45641381-45641503) | |
| 56-189, gnl|Mm7|chr1 (45641510-45641383) | |
| 56-189, gnl|monDom2|scaffold_2 (94367867-94367994) | |
| 56-189, gnl|oryCun1|scaffold_199521 (177807-177684) | |
| 56-189, gnl|panTro1|chr13 (79622647-79622770) | |
| 56-189, gnl|rheMac2|chr12 (52703660-52703783) | |
| 56-189, gnl|rn3|chr9 (44405128-44405250) | |
| 56-189, gnl|tetNig1|chr2 (16757196-16757303) | |
| 56-189, gnl|xenTro1|scaffold_48 (616741-616629) | |
| 242-342, gnl|bosTau2|chr2 (3066240-3066340) | |
| 242-342, gnl|canFam2|chr36 (33600173-33600280) | |
| 242-342, gnl|danRer3|chr9 (37407641-37407748) | |
| 242-342, gnl|dasNov1|scaffold_1007 (34019-33843) | |
| 242-342, gnl|echTel1|scaffold_288923 (94698-94591) | |
| 242-342, gnl|fr1|chrUn (211931595-211931702) | |
| 242-342, gnl|galGal2|chr7 (510127-510020) | |
| 242-342, gnl|hg17|chr2 (189753398-189753505) | |
| 242-342, gnl|Hg17|chr2 (189753503-189753403) | |
| 242-342, gnl|loxAfr1|scaffold_12633 (41124-41016) | |
| 242-342, gnl|mm7|chr1 (45640066-45640173) | |
| 242-342, gnl|Mm7|chr1 (45640171-45640071) | |
| 242-342, gnl|monDom2|scaffold_2 (94364534-94364641) | |
| 242-342, gnl|oryCun1|scaffold_160690 (873-978) | |
| 242-342, gnl|panTro1|chr13 (79621258-79621365) | |
| 242-342, gnl|rheMac2|chr12 (52702253-52702360) | |
| 242-342, gnl|rn3|chr9 (44403824-44403931) | |
| 242-342, gnl|tetNig1|chr2 (16756129-16756236) | |
| 242-342, gnl|xenTro1|scaffold_48 (674485-674593) | |
| 603-707, gnl|bosTau2|chr2 (3074137-3074241) | |
| 603-707, gnl|canFam2|chr36 (33593821-33593965) | |
| 603-707, gnl|danRer3|chr9 (37406519-37406633) | |
| 603-707, gnl|dasNov1|scaffold_1007 (38728-38582) | |
| 603-707, gnl|echTel1|scaffold_214085 (1642-1507) | |
| 603-707, gnl|fr1|chrUn (211930662-211930759) | |
| 603-707, gnl|galGal2|chr7 (513892-513708) | |
| 603-707, gnl|hg17|chr2 (189748631-189748778) | |
| 603-707, gnl|Hg17|chr2 (189748759-189748655) | |
| 603-707, gnl|loxAfr1|scaffold_4638 (55476-55329) | |
| 603-707, gnl|mm7|chr1 (45632684-45632829) | |
| 603-707, gnl|Mm7|chr1 (45632810-45632706) | |
| 603-707, gnl|monDom2|scaffold_2 (94360832-94360971) | |
| 603-707, gnl|oryCun1|scaffold_88737 (8237-8384) | |
| 603-707, gnl|panTro1|chr13 (79616510-79616657) | |
| 603-707, gnl|rheMac2|chr12 (52697003-52697150) | |
| 603-707, gnl|rn3|chr9 (44399496-44399641) | |
| 603-707, gnl|tetNig1|chr2 (16755185-16755318) | |
| 603-707, gnl|xenTro1|scaffold_48 (669098-669218) | |
| 712-852, gnl|bosTau2|chr2 (3072307-3072451) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 56-189, gnl|bosTau2|chr2 (3064500-3064633) | |
| 56-189, gnl|canFam2|chr36 (33602494-33602618) | |
| 56-189, gnl|danRer3|chr9 (37407973-37408095) | |
| 56-189, gnl|dasNov1|scaffold_1007 (29101-28977) | |
| 56-189, gnl|echTel1|scaffold_288923 (92628-92506) | |
| 56-189, gnl|fr1|chrUn (211932094-211932201) | |
| 56-189, gnl|galGal2|chr7 (508698-508575) | |
| 56-189, gnl|hg17|chr2 (189754786-189754909) | |
| 56-189, gnl|Hg17|chr2 (189754917-189754788) | |
| 56-189, gnl|loxAfr1|scaffold_4638 (48167-48045) | |
| 56-189, gnl|mm7|chr1 (45641381-45641503) | |
| 56-189, gnl|Mm7|chr1 (45641510-45641383) | |
| 56-189, gnl|monDom2|scaffold_2 (94367867-94367994) | |
| 56-189, gnl|oryCun1|scaffold_199521 (177807-177684) | |
| 56-189, gnl|panTro1|chr13 (79622647-79622770) | |
| 56-189, gnl|rheMac2|chr12 (52703660-52703783) | |
| 56-189, gnl|rn3|chr9 (44405128-44405250) | |
| 56-189, gnl|tetNig1|chr2 (16757196-16757303) | |
| 56-189, gnl|xenTro1|scaffold_48 (616741-616629) | |
| 242-342, gnl|bosTau2|chr2 (3066240-3066340) | |
| 242-342, gnl|canFam2|chr36 (33600173-33600280) | |
| 242-342, gnl|danRer3|chr9 (37407641-37407748) | |
| 242-342, gnl|dasNov1|scaffold_1007 (34019-33843) | |
| 242-342, gnl|echTel1|scaffold_288923 (94698-94591) | |
| 242-342, gnl|fr1|chrUn (211931595-211931702) | |
| 242-342, gnl|galGal2|chr7 (510127-510020) | |
| 242-342, gnl|hg17|chr2 (189753398-189753505) | |
| 242-342, gnl|Hg17|chr2 (189753503-189753403) | |
| 242-342, gnl|loxAfr1|scaffold_12633 (41124-41016) | |
| 242-342, gnl|mm7|chr1 (45640066-45640173) | |
| 242-342, gnl|Mm7|chr1 (45640171-45640071) | |
| 242-342, gnl|monDom2|scaffold_2 (94364534-94364641) | |
| 242-342, gnl|oryCun1|scaffold_160690 (873-978) | |
| 242-342, gnl|panTro1|chr13 (79621258-79621365) | |
| 242-342, gnl|rheMac2|chr12 (52702253-52702360) | |
| 242-342, gnl|rn3|chr9 (44403824-44403931) | |
| 242-342, gnl|tetNig1|chr2 (16756129-16756236) | |
| 242-342, gnl|xenTro1|scaffold_48 (674485-674593) | |
| 603-707, gnl|bosTau2|chr2 (3074137-3074241) | |
| 603-707, gnl|canFam2|chr36 (33593821-33593965) | |
| 603-707, gnl|danRer3|chr9 (37406519-37406633) | |
| 603-707, gnl|dasNov1|scaffold_1007 (38728-38582) | |
| 603-707, gnl|echTel1|scaffold_214085 (1642-1507) | |
| 603-707, gnl|fr1|chrUn (211930662-211930759) | |
| 603-707, gnl|galGal2|chr7 (513892-513708) | |
| 603-707, gnl|hg17|chr2 (189748631-189748778) | |
| 603-707, gnl|Hg17|chr2 (189748759-189748655) | |
| 603-707, gnl|loxAfr1|scaffold_4638 (55476-55329) | |
| 603-707, gnl|mm7|chr1 (45632684-45632829) | |
| 603-707, gnl|Mm7|chr1 (45632810-45632706) | |
| 603-707, gnl|monDom2|scaffold_2 (94360832-94360971) | |
| 603-707, gnl|oryCun1|scaffold_88737 (8237-8384) | |
| 603-707, gnl|panTro1|chr13 (79616510-79616657) | |
| 603-707, gnl|rheMac2|chr12 (52697003-52697150) | |
| 603-707, gnl|rn3|chr9 (44399496-44399641) | |
| 603-707, gnl|tetNig1|chr2 (16755185-16755318) | |
| 603-707, gnl|xenTro1|scaffold_48 (669098-669218) | |
| 712-852, gnl|bosTau2|chr2 (3072307-3072451) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |