Non-Coding RNA Search

Ss1.1-Pig4-TMW8049K05.3

Sequence:


               
               TTCCTGCAGCGTTTGTGAGGCATATCCTGTCGGGGTGACGGGCCCCGTGGGGCGGGTACG
GCTCCTCCCAGCCCCCCCCTTCTCTAGTTGCCCTCCCCAGTGTTTTTCTTCCTGGCCTTT
GCTCTCTGGCCCCTGCCCTTCCCCTACTACCATGACTTCCTCCTAGCATGTCTCTGCATG
GAGCTGACTGAGGAGGGGGGGTTCTTCAAAGAGGAAGGCAGCCTGGGGGTGTGGTACCTC
CTCCTCTCCTAGAATGGGCTCTGAGGTTTTGCTTCTAGGGCGCTGGCGTCTGGGAACTCA
CACCAGCCTATCCCCGTCTTGCTTCAGGGTGACCCTGTGGCCCGGGAGCATGGGCGGTTG
ACAGAGGGGGGTGGGTTGCCCGCCCCATGGTGCTGCTGCAGCCGGAGTCGCTTCCCCTTC
CTTCTGCTGGGCAGCTTGGAGGTACCCTAACCCAAAACTCTGTCTTTTCCTCCCGCCAAT
GGCTGACAGTAGCTGTAGGTGTAGCTGAGAACTCTTCTGCTCTGCTGTGTTCTTGCTGCT
CAGGGTCGGGTGGGGAACTAACAGCTGGTGGGAGGGGAGCTGGAGGCCGAGAACCGGTCA
GACTCAAGGTAGCGCCTCTGCAAACTGACCCCAAGGTGGGTTGCTGTAGGCACGTTCCTC
CTTAGGCTACCTTTGTGGTCTTGCGGTCTCCTGGCCCCTGGTGAACCCCTCCCCTTGGCC
CTGCTCCCTGGTTCAGCCCCCTCTCCTTCCCACAGAGCTTGTCCGCATGGTGCTGAATGG
CTGAGGACATTCCCAGTGGGAGACGGTGTGTGTAGCCCTGAAGGCCTCCTAGACTCTCTT
GTCACAGAACTTTTCCCAGCATGTCTCCCTCAGATGATGTTTGCCATCAGCATTTACCAA
ATAAACTTGTTCTCTGCCCTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGCAGCGTTTGTGAGGCATATCCTGTCGGGGTGACGGGCCCCGTGGGGCGGGTACG
GCTCCTCCCAGCCCCCCCCTTCTCTAGTTGCCCTCCCCAGTGTTTTTCTTCCTGGCCTTT
GCTCTCTGGCCCCTGCCCTTCCCCTACTACCATGACTTCCTCCTAGCATGTCTCTGCATG
GAGCTGACTGAGGAGGGGGGGTTCTTCAAAGAGGAAGGCAGCCTGGGGGTGTGGTACCTC
CTCCTCTCCTAGAATGGGCTCTGAGGTTTTGCTTCTAGGGCGCTGGCGTCTGGGAACTCA
CACCAGCCTATCCCCGTCTTGCTTCAGGGTGACCCTGTGGCCCGGGAGCATGGGCGGTTG
ACAGAGGGGGGTGGGTTGCCCGCCCCATGGTGCTGCTGCAGCCGGAGTCGCTTCCCCTTC
CTTCTGCTGGGCAGCTTGGAGGTACCCTAACCCAAAACTCTGTCTTTTCCTCCCGCCAAT
GGCTGACAGTAGCTGTAGGTGTAGCTGAGAACTCTTCTGCTCTGCTGTGTTCTTGCTGCT
CAGGGTCGGGTGGGGAACTAACAGCTGGTGGGAGGGGAGCTGGAGGCCGAGAACCGGTCA
GACTCAAGGTAGCGCCTCTGCAAACTGACCCCAAGGTGGGTTGCTGTAGGCACGTTCCTC
CTTAGGCTACCTTTGTGGTCTTGCGGTCTCCTGGCCCCTGGTGAACCCCTCCCCTTGGCC
CTGCTCCCTGGTTCAGCCCCCTCTCCTTCCCACAGAGCTTGTCCGCATGGTGCTGAATGG
CTGAGGACATTCCCAGTGGGAGACGGTGTGTGTAGCCCTGAAGGCCTCCTAGACTCTCTT
GTCACAGAACTTTTCCCAGCATGTCTCCCTCAGATGATGTTTGCCATCAGCATTTACCAA
ATAAACTTGTTCTCTGCCCTAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-270, - strand, RNAz p=0.513659

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-270, - strand, RNAz p=0.513659

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-798, gnl|bosTau2|chr5 (33458017-33457218)
               

               
               1-798, gnl|Hg17|chr12 (54840668-54841480)
               

               
               1-798, gnl|Mm7|chr10 (127993478-127992700)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-798, gnl|bosTau2|chr5 (33458017-33457218)
               

               
               1-798, gnl|Hg17|chr12 (54840668-54841480)
               

               
               1-798, gnl|Mm7|chr10 (127993478-127992700)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	1-798, gnl\|bosTau2\|chr5 (33458017-33457218)
	1-798, gnl\|Hg17\|chr12 (54840668-54841480)
	1-798, gnl\|Mm7\|chr10 (127993478-127992700)

	amn (0.417711)
	elu (0.385356)
	lnt (0.284616)
	ecc (0.23007)
	fcc (0.197785)
	eje (0.197668)
	col (0.195008)
	nlu (0.191681)
	fbs (0.175346)
	cki (0.165235)
	che (0.136314)
	cov (0.132153)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)