Non-Coding RNA Search

Ss1.1-Pig4-TMW8049K19.5

Sequence:


               
               ATGGTTTTAAATGTTCCTTTGACTGAAGTCTGAAACTGGGCTCCTGCTATATCATCTCTG
TGACTGAAAGCTAGAAACTAAGGGTTATCTTTTACACAGAATTGTGTGCAATATTCTTAA
ATACTACTGCTCTAAAACTTGGAGGAGTCTTGCAGTTATCCTAGCATTGTATAAACAGCC
TTAAGTACAGCCTAAGAAGAGAATTCTTTTTTCTTCTTTAGTCTTTCTGCCATTTTTTAT
TTTCAGTTATATGTGCTGAAATAATTACTGGTAAAATTTCAGGGTTGTGGATTATCTTCC
ACACATGAATTTTCTTTCTCCTGGCACTAATATAAAGCACATCTCTTAACTGCTTGGTGC
CATTGCTAGTGCTTCATCCTGTTGCTGGCAGTGGGATGTGTACTAACAAAATTAAGTTCT
AGCATTTTAGGAGGTTATGGATGACTTTGTGGTTGTTAGGTTCACACCCTGTTTTATAAA
CATCAAAATGGCAGAACCATTGCTGACTTTAAGTTCACATGACGAATGTGCTTTAACAAT
TCCCAGTACTGTCAGTATTGTGAAATAATTCCTCCTAAAGATAAGGATCACTGGCTTCTA
TGCTCATCTTCTTTTCTCTCATCATTGTGTTTTTTCCCAACTATGTTTTCTTACATAAAT
TATGTTTCAAAGCTTGATTTTTTTTGGTTTAGATCTGTGAAGCAGTTTTCTGATTAAAAT
TAATTCATCTAATACCCTTTTATGAGGTTTTACTAGAAAGTCATTACATTGTCATTTTTC
TTACCCCAGGCCTGTAAAAATGACCTATAAGTTTATTCATGTACAATTTGTTTGCTTGAG
TTTCTTAACGAAAAAGATAGACTGTGAGAGTCAACTCAACATGGCAAAACCATTTTTGAG
ATGGTGACATAACAGGTAGTGGAAATAATTAACGAATTCCATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTTTTAAATGTTCCTTTGACTGAAGTCTGAAACTGGGCTCCTGCTATATCATCTCTG
TGACTGAAAGCTAGAAACTAAGGGTTATCTTTTACACAGAATTGTGTGCAATATTCTTAA
ATACTACTGCTCTAAAACTTGGAGGAGTCTTGCAGTTATCCTAGCATTGTATAAACAGCC
TTAAGTACAGCCTAAGAAGAGAATTCTTTTTTCTTCTTTAGTCTTTCTGCCATTTTTTAT
TTTCAGTTATATGTGCTGAAATAATTACTGGTAAAATTTCAGGGTTGTGGATTATCTTCC
ACACATGAATTTTCTTTCTCCTGGCACTAATATAAAGCACATCTCTTAACTGCTTGGTGC
CATTGCTAGTGCTTCATCCTGTTGCTGGCAGTGGGATGTGTACTAACAAAATTAAGTTCT
AGCATTTTAGGAGGTTATGGATGACTTTGTGGTTGTTAGGTTCACACCCTGTTTTATAAA
CATCAAAATGGCAGAACCATTGCTGACTTTAAGTTCACATGACGAATGTGCTTTAACAAT
TCCCAGTACTGTCAGTATTGTGAAATAATTCCTCCTAAAGATAAGGATCACTGGCTTCTA
TGCTCATCTTCTTTTCTCTCATCATTGTGTTTTTTCCCAACTATGTTTTCTTACATAAAT
TATGTTTCAAAGCTTGATTTTTTTTGGTTTAGATCTGTGAAGCAGTTTTCTGATTAAAAT
TAATTCATCTAATACCCTTTTATGAGGTTTTACTAGAAAGTCATTACATTGTCATTTTTC
TTACCCCAGGCCTGTAAAAATGACCTATAAGTTTATTCATGTACAATTTGTTTGCTTGAG
TTTCTTAACGAAAAAGATAGACTGTGAGAGTCAACTCAACATGGCAAAACCATTTTTGAG
ATGGTGACATAACAGGTAGTGGAAATAATTAACGAATTCCATAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               195-470, + strand, RNAz p=0.907006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-470, + strand, RNAz p=0.907006

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of U72938, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of U72938, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-948, gnl|bosTau2|chrX (22979580-22978631)
               

               
               1-948, gnl|Hg17|chrX (76569495-76568539)
               

               
               1-948, gnl|Mm7|chrX (101127065-101126112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-948, gnl|bosTau2|chrX (22979580-22978631)
               

               
               1-948, gnl|Hg17|chrX (76569495-76568539)
               

               
               1-948, gnl|Mm7|chrX (101127065-101126112)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	1-948, gnl\|bosTau2\|chrX (22979580-22978631)
	1-948, gnl\|Hg17\|chrX (76569495-76568539)
	1-948, gnl\|Mm7\|chrX (101127065-101126112)