Ss1.1-Pig4-TMW8049L08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACGCTCACTGCGGAACGAGCTGTAGGGCTGGGTCCGGAGGGCGCGCGCTGAGATGATG CTGAGAGGAAACCTGAAGCAAGTGCGCATCGAGAAGAACCCGGCGCGCCTCCGTGCCCTA GAGTCGGCGGCCGGCGAGGGCGAGCCGGCGGCCATGGCGCTCGCGCTGCCCGGGGAGCCG CCCGCGCCCGCGCCCGCCGCGCCCGCCGAGGACCGGCCGGCCGAGGAGGGCGGCTTCACC ATCGACATCAAGAGCTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCGCCTC TTCGTGGGGAACCTGCCGACGGACATCACCGAGGACGACTTCAAGCGGCTGTTCGAGCGC TACGGCGAGCCCAGCGAGGTCTTCATCAACCGCGACCGCGGCTTCGGCTTCATCCGCCTG GAATCCAGAACCCTGGCTGAAATTGCAAAAGCAGAGCTGGATGGCACCATTTTGAAGAGC AGACCTCTGCGAATTCGTTTTGCTACACATGGAGCAGCCCTAACTGTCAAGAACCTTTCT CCAGTTGTTTCCAATGAGCTCCTAGAGCAAGCGTTTTCTCAGTTCGGTCCAGTAGAGAAA GCTGTTGTTGTTGTGGATGACCGTGGTAGAGCTACGGGGAAAGGTTTTGTAGAATTTGCT GCAAAACCTCCTGCACGAAAGGCTCTGGAAAGATGTGGTGATGGGGCGTTCTTGCTAACA ACGACCCCTCGTCCAGTCATTGTGGAGCCTATGGAGCAGTTTGATGATGAAGATGGCTTG CCAGAGAAGCTAATGCAGAAAACTCAACAGTATCATAAGGAAAGAGAGCAGCCGCCCCGA TTTGCTCAACCTGGAACCTTTGAGTTTGAGTACGCGTCTCGGTGGAAGGCTCTCGATGAA ATGGAGAAGCAGCAGCGTGAGCAGGTTGACAGAAACATCAGAGAAGCCAAAGAGAAGCTG GAGGCGGAAATGGAAGCAGCCAGGCACGAGCACCAGTTGATGCTGATGAGGCAAGATTTA ATGAGGCGTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACGCTCACTGCGGAACGAGCTGTAGGGCTGGGTCCGGAGGGCGCGCGCTGAGATGATG CTGAGAGGAAACCTGAAGCAAGTGCGCATCGAGAAGAACCCGGCGCGCCTCCGTGCCCTA GAGTCGGCGGCCGGCGAGGGCGAGCCGGCGGCCATGGCGCTCGCGCTGCCCGGGGAGCCG CCCGCGCCCGCGCCCGCCGCGCCCGCCGAGGACCGGCCGGCCGAGGAGGGCGGCTTCACC ATCGACATCAAGAGCTTCCTCAAGCCGGGCGAGAAGACGTACACGCAGCGCTGCCGCCTC TTCGTGGGGAACCTGCCGACGGACATCACCGAGGACGACTTCAAGCGGCTGTTCGAGCGC TACGGCGAGCCCAGCGAGGTCTTCATCAACCGCGACCGCGGCTTCGGCTTCATCCGCCTG GAATCCAGAACCCTGGCTGAAATTGCAAAAGCAGAGCTGGATGGCACCATTTTGAAGAGC AGACCTCTGCGAATTCGTTTTGCTACACATGGAGCAGCCCTAACTGTCAAGAACCTTTCT CCAGTTGTTTCCAATGAGCTCCTAGAGCAAGCGTTTTCTCAGTTCGGTCCAGTAGAGAAA GCTGTTGTTGTTGTGGATGACCGTGGTAGAGCTACGGGGAAAGGTTTTGTAGAATTTGCT GCAAAACCTCCTGCACGAAAGGCTCTGGAAAGATGTGGTGATGGGGCGTTCTTGCTAACA ACGACCCCTCGTCCAGTCATTGTGGAGCCTATGGAGCAGTTTGATGATGAAGATGGCTTG CCAGAGAAGCTAATGCAGAAAACTCAACAGTATCATAAGGAAAGAGAGCAGCCGCCCCGA TTTGCTCAACCTGGAACCTTTGAGTTTGAGTACGCGTCTCGGTGGAAGGCTCTCGATGAA ATGGAGAAGCAGCAGCGTGAGCAGGTTGACAGAAACATCAGAGAAGCCAAAGAGAAGCTG GAGGCGGAAATGGAAGCAGCCAGGCACGAGCACCAGTTGATGCTGATGAGGCAAGATTTA ATGAGGCGTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 856-975, + strand, RNAz p=0.758924 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 856-975, + strand, RNAz p=0.758924 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 18-421, gnl|bosTau2|chr12 (20567650-20567252) | |
| 18-421, gnl|Hg17|chr13 (19254954-19254525) | |
| 18-421, gnl|Mm7|chr14 (51645921-51645509) | |
| 611-1032, gnl|bosTau2|chr18 (16534522-16534940) | |
| 611-1032, gnl|Hg17|chr16 (68348816-68348395) | |
| 611-1032, gnl|Mm7|chrX (75921268-75920847) | |
| 816-1015, gnl|bosTau2|chr12 (20550668-20550469) | |
| 816-1015, gnl|canFam2|chr25 (21303681-21303502) | |
| 816-1015, gnl|danRer3|chr14 (66827521-66827342) | |
| 816-1015, gnl|dasNov1|scaffold_29783 (1264-1443) | |
| 816-1015, gnl|echTel1|scaffold_308502 (406522-406672) | |
| 816-1015, gnl|fr1|chrUn (201814241-201814062) | |
| 816-1015, gnl|galGal2|chr1 (171125773-171125594) | |
| 816-1015, gnl|hg17|chr13 (18699386-18699553) | |
| 816-1015, gnl|Hg17|chr13 (19223610-19223411) | |
| 816-1015, gnl|loxAfr1|scaffold_90140 (2931-3110) | |
| 816-1015, gnl|mm7|chr14 (51629551-51629730) | |
| 816-1015, gnl|Mm7|chr14 (51629752-51629553) | |
| 816-1015, gnl|monDom2|scaffold_15 (27338289-27338468) | |
| 816-1015, gnl|oryCun1|scaffold_90809 (7697-7876) | |
| 816-1015, gnl|panTro1|chr14 (17600527-17600706) | |
| 816-1015, gnl|rheMac2|chr17 (1699481-1699302) | |
| 816-1015, gnl|rn3|chr15 (35778612-35778791) | |
| 816-1015, gnl|tetNig1|chr3 (3976783-3976962) | |
| 816-1015, gnl|xenTro1|scaffold_327 (788810-788989) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-421, gnl|bosTau2|chr12 (20567650-20567252) | |
| 18-421, gnl|Hg17|chr13 (19254954-19254525) | |
| 18-421, gnl|Mm7|chr14 (51645921-51645509) | |
| 611-1032, gnl|bosTau2|chr18 (16534522-16534940) | |
| 611-1032, gnl|Hg17|chr16 (68348816-68348395) | |
| 611-1032, gnl|Mm7|chrX (75921268-75920847) | |
| 816-1015, gnl|bosTau2|chr12 (20550668-20550469) | |
| 816-1015, gnl|canFam2|chr25 (21303681-21303502) | |
| 816-1015, gnl|danRer3|chr14 (66827521-66827342) | |
| 816-1015, gnl|dasNov1|scaffold_29783 (1264-1443) | |
| 816-1015, gnl|echTel1|scaffold_308502 (406522-406672) | |
| 816-1015, gnl|fr1|chrUn (201814241-201814062) | |
| 816-1015, gnl|galGal2|chr1 (171125773-171125594) | |
| 816-1015, gnl|hg17|chr13 (18699386-18699553) | |
| 816-1015, gnl|Hg17|chr13 (19223610-19223411) | |
| 816-1015, gnl|loxAfr1|scaffold_90140 (2931-3110) | |
| 816-1015, gnl|mm7|chr14 (51629551-51629730) | |
| 816-1015, gnl|Mm7|chr14 (51629752-51629553) | |
| 816-1015, gnl|monDom2|scaffold_15 (27338289-27338468) | |
| 816-1015, gnl|oryCun1|scaffold_90809 (7697-7876) | |
| 816-1015, gnl|panTro1|chr14 (17600527-17600706) | |
| 816-1015, gnl|rheMac2|chr17 (1699481-1699302) | |
| 816-1015, gnl|rn3|chr15 (35778612-35778791) | |
| 816-1015, gnl|tetNig1|chr3 (3976783-3976962) | |
| 816-1015, gnl|xenTro1|scaffold_327 (788810-788989) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) | |
| ecc (0.115035) | |
| cbl (0.114797) |