Non-Coding RNA Search

Ss1.1-Pig4-TMW8049L17.5

Sequence:


               
               TCTTTCCACCTCGAGGAAGTTAGCGGCGGAAACCGGGTTAGCGGTGGAGAAGAGATATTG
GAGACCCAATGGCGACTGTGGAAGCCAGCGGCAGCGATGGGCAAGGGGTCGAGACCTCCG
TCACCTATTACCGGTTGGAGGAGGTGGCGAAGCGCAACTCCCCGAAAGAGCTATGGCTGG
TTATCCATGGCCGAGTCTACGATGTCACCCGCTTCATGAACGAGCATCCTGGTGGAGAAG
AGGTTCTGATGGAACAGGCTGGTAGAGATGCAACTGAAAGCTTTGAAGATGTAGGCCACT
CCTCTGATGCCAGAGAAATGCTCAAGCAGTACTATATTGGTGATGTGCATCCGAATGACC
TTAAATCTGAAAGTGGCAAGGAGCCTCCGACAAGCGGCGTGTGCAAAAGCTACTGGTCAT
ACTGGATCTTCCCCATCCTGGGCGCCATCCTCTTAGGTTTTCTCTATCGTTACTACACGG
CGGCGGAGAGCAAATCCTCCTGAGGAGACTTTGTTGACGTCGGGAAAGCACATCCACTTG
GGAGCAAGAACCAGAGACTCAATTGGAGGCTGCGGCTGTGCCCTCTTCTCGAATACTGCC
AATTATATCCTCCCCCTCGGAGCCCAGACTGTTGGCCAGACATCCGCCTCAGCCCTGGGG
CCAGTTGTGAAGTCATTTCTCAGAGCCTTACTCTCAAAGCACCTGCTCATTGTTCTGCGT
CTTTGCCGTTGTTTCCTCTCTTCATGGTTTCCACGAGCACCCTTGTCTTTCAAAACTGTG
TTTTATAACCAGAGTCCGCACGTCCTCGTGACACTGCCTTTTGGTGTCATCGCCTGCTTT
CCAGTACTTAGTTACTTAGACCTTCTTAATGGGGCAGCCCACTCTGGTTTTGAAGCTTTT
CTTTTTCCCCTTTTGTTTTAAGTAAATAGTATCTTTCTTTTAAATTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTCCACCTCGAGGAAGTTAGCGGCGGAAACCGGGTTAGCGGTGGAGAAGAGATATTG
GAGACCCAATGGCGACTGTGGAAGCCAGCGGCAGCGATGGGCAAGGGGTCGAGACCTCCG
TCACCTATTACCGGTTGGAGGAGGTGGCGAAGCGCAACTCCCCGAAAGAGCTATGGCTGG
TTATCCATGGCCGAGTCTACGATGTCACCCGCTTCATGAACGAGCATCCTGGTGGAGAAG
AGGTTCTGATGGAACAGGCTGGTAGAGATGCAACTGAAAGCTTTGAAGATGTAGGCCACT
CCTCTGATGCCAGAGAAATGCTCAAGCAGTACTATATTGGTGATGTGCATCCGAATGACC
TTAAATCTGAAAGTGGCAAGGAGCCTCCGACAAGCGGCGTGTGCAAAAGCTACTGGTCAT
ACTGGATCTTCCCCATCCTGGGCGCCATCCTCTTAGGTTTTCTCTATCGTTACTACACGG
CGGCGGAGAGCAAATCCTCCTGAGGAGACTTTGTTGACGTCGGGAAAGCACATCCACTTG
GGAGCAAGAACCAGAGACTCAATTGGAGGCTGCGGCTGTGCCCTCTTCTCGAATACTGCC
AATTATATCCTCCCCCTCGGAGCCCAGACTGTTGGCCAGACATCCGCCTCAGCCCTGGGG
CCAGTTGTGAAGTCATTTCTCAGAGCCTTACTCTCAAAGCACCTGCTCATTGTTCTGCGT
CTTTGCCGTTGTTTCCTCTCTTCATGGTTTCCACGAGCACCCTTGTCTTTCAAAACTGTG
TTTTATAACCAGAGTCCGCACGTCCTCGTGACACTGCCTTTTGGTGTCATCGCCTGCTTT
CCAGTACTTAGTTACTTAGACCTTCTTAATGGGGCAGCCCACTCTGGTTTTGAAGCTTTT
CTTTTTCCCCTTTTGTTTTAAGTAAATAGTATCTTTCTTTTAAATTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57997557|emb|CAI46070.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57997557|emb|CAI46070.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-224, gnl|bosTau2|chr18 (13785669-13785443)
               

               
               5-224, gnl|Hg17|chr16 (68016040-68016261)
               

               
               5-224, gnl|Mm7|chr8 (105750787-105751010)
               


               
               408-947, gnl|bosTau2|chr18 (13765444-13764905)
               

               
               408-947, gnl|Hg17|chr16 (68053832-68054497)
               

               
               408-947, gnl|Mm7|chr8 (105783713-105784235)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-224, gnl|bosTau2|chr18 (13785669-13785443)
               

               
               5-224, gnl|Hg17|chr16 (68016040-68016261)
               

               
               5-224, gnl|Mm7|chr8 (105750787-105751010)
               


               
               408-947, gnl|bosTau2|chr18 (13765444-13764905)
               

               
               408-947, gnl|Hg17|chr16 (68053832-68054497)
               

               
               408-947, gnl|Mm7|chr8 (105783713-105784235)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pla (0.802032)
               

               
               fty (0.351679)
               

               
               nco (0.323468)
               

               
               col (0.195008)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.802032)
               

               
               fty (0.351679)
               

               
               nco (0.323468)
               

               
               col (0.195008)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	5-224, gnl\|bosTau2\|chr18 (13785669-13785443)
	5-224, gnl\|Hg17\|chr16 (68016040-68016261)
	5-224, gnl\|Mm7\|chr8 (105750787-105751010)

	408-947, gnl\|bosTau2\|chr18 (13765444-13764905)
	408-947, gnl\|Hg17\|chr16 (68053832-68054497)
	408-947, gnl\|Mm7\|chr8 (105783713-105784235)

	pla (0.802032)
	fty (0.351679)
	nco (0.323468)
	col (0.195008)
	cag (0.151194)
	lnt (0.142308)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	bla (0.124347)
	med (0.116252)
	jej (0.0989218)