Non-Coding RNA Search

Ss1.1-Pig4-TMW8049L20.5

Sequence:


               
               GCGAAAGCTCCCACGGCTCAGGCCGAGTTCCTCAACATGGGTTCTTTCCTTTCCCAGCCT
TCTGAACCCGCCAAGGTCGTTGTGCCTCCTGAGGCCGCCTCCTCCGCCAAGCCCGCGCCC
ATCACAGCATCCCGAGAGCCGACCTCTCCAGCGCAAGACTCTCCATTTAAAAACTGCTGG
AGCTGTCGCGTGCTTTCCGGGTCGGGGCTGATAGGGGCGGGCGGGTACGTGTACTGGGTC
GCGAGGAAGCCCTTGAAGCTGGGATACTCCCCGAGTCCAGGGACTATTGCGCAGATGGTC
TTCGGCATCAGCATTGCTTGTTGGGGTGTAATCATCCTGTCAGACCCCAAAGGGAAGGCC
TTCCGTGCTGGTTGAAAATACCACCGGTGTATTTGTCATCTCTCTGTGTCATCATGACAC
ACAGAGCAAGCATGGCTCTTATGGATGTTGTGGACAGACACATGGACATTGACAGACTTC
AATCCAGCATATATTGCAAGACTGAAAGGACAAACATGGGTTGTCATTCAAGGGCCATGA
ATGTTTGTGGCTTTCTTTTCAGGTTCCACAGGGACCAATAAATCCCTCAGAGAAGAGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAAAGCTCCCACGGCTCAGGCCGAGTTCCTCAACATGGGTTCTTTCCTTTCCCAGCCT
TCTGAACCCGCCAAGGTCGTTGTGCCTCCTGAGGCCGCCTCCTCCGCCAAGCCCGCGCCC
ATCACAGCATCCCGAGAGCCGACCTCTCCAGCGCAAGACTCTCCATTTAAAAACTGCTGG
AGCTGTCGCGTGCTTTCCGGGTCGGGGCTGATAGGGGCGGGCGGGTACGTGTACTGGGTC
GCGAGGAAGCCCTTGAAGCTGGGATACTCCCCGAGTCCAGGGACTATTGCGCAGATGGTC
TTCGGCATCAGCATTGCTTGTTGGGGTGTAATCATCCTGTCAGACCCCAAAGGGAAGGCC
TTCCGTGCTGGTTGAAAATACCACCGGTGTATTTGTCATCTCTCTGTGTCATCATGACAC
ACAGAGCAAGCATGGCTCTTATGGATGTTGTGGACAGACACATGGACATTGACAGACTTC
AATCCAGCATATATTGCAAGACTGAAAGGACAAACATGGGTTGTCATTCAAGGGCCATGA
ATGTTTGTGGCTTTCTTTTCAGGTTCCACAGGGACCAATAAATCCCTCAGAGAAGAGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545619|emb|CAB70768.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545619|emb|CAB70768.3|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-250, - strand, RNAz p=0.965604

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-250, - strand, RNAz p=0.965604

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               15-311, gnl|bosTau2|chr8 (16712280-16712576)
               

               
               15-311, gnl|canFam2|chr11 (31682294-31682483)
               

               
               15-311, gnl|dasNov1|scaffold_40370 (2745-2556)
               

               
               15-311, gnl|echTel1|scaffold_158234 (3597-3786)
               

               
               15-311, gnl|hg17|chr15 (22965641-22965830)
               

               
               15-311, gnl|Hg17|chr9 (7789756-7789460)
               

               
               15-311, gnl|loxAfr1|scaffold_27362 (5569-5758)
               

               
               15-311, gnl|mm7|chr4 (74681706-74681893)
               

               
               15-311, gnl|Mm7|chr4 (74681992-74681704)
               

               
               15-311, gnl|oryCun1|scaffold_103318 (9760-9949)
               

               
               15-311, gnl|panTro1|chr16 (23878516-23878327)
               

               
               15-311, gnl|rheMac2|chr15 (69354356-69354167)
               

               
               15-311, gnl|rn3|chr5 (93259809-93259998)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-311, gnl|bosTau2|chr8 (16712280-16712576)
               

               
               15-311, gnl|canFam2|chr11 (31682294-31682483)
               

               
               15-311, gnl|dasNov1|scaffold_40370 (2745-2556)
               

               
               15-311, gnl|echTel1|scaffold_158234 (3597-3786)
               

               
               15-311, gnl|hg17|chr15 (22965641-22965830)
               

               
               15-311, gnl|Hg17|chr9 (7789756-7789460)
               

               
               15-311, gnl|loxAfr1|scaffold_27362 (5569-5758)
               

               
               15-311, gnl|mm7|chr4 (74681706-74681893)
               

               
               15-311, gnl|Mm7|chr4 (74681992-74681704)
               

               
               15-311, gnl|oryCun1|scaffold_103318 (9760-9949)
               

               
               15-311, gnl|panTro1|chr16 (23878516-23878327)
               

               
               15-311, gnl|rheMac2|chr15 (69354356-69354167)
               

               
               15-311, gnl|rn3|chr5 (93259809-93259998)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.213858)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)

	15-311, gnl\|bosTau2\|chr8 (16712280-16712576)
	15-311, gnl\|canFam2\|chr11 (31682294-31682483)
	15-311, gnl\|dasNov1\|scaffold_40370 (2745-2556)
	15-311, gnl\|echTel1\|scaffold_158234 (3597-3786)
	15-311, gnl\|hg17\|chr15 (22965641-22965830)
	15-311, gnl\|Hg17\|chr9 (7789756-7789460)
	15-311, gnl\|loxAfr1\|scaffold_27362 (5569-5758)
	15-311, gnl\|mm7\|chr4 (74681706-74681893)
	15-311, gnl\|Mm7\|chr4 (74681992-74681704)
	15-311, gnl\|oryCun1\|scaffold_103318 (9760-9949)
	15-311, gnl\|panTro1\|chr16 (23878516-23878327)
	15-311, gnl\|rheMac2\|chr15 (69354356-69354167)
	15-311, gnl\|rn3\|chr5 (93259809-93259998)

	nms (0.213858)
	col (0.195008)
	nco (0.161734)
	eli (0.151814)
	lnt (0.142308)
	pla (0.133672)