Ss1.1-Pig4-TMW8049L22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAACGGAATCCGTGTCATGGAGGACCCGGGTGTCAGGGACACCATGCTGCAGGCCCTGA GGTTTGTGATTCAGGGAGCAGGGGCCAAAGTGGATGTGGTCATCCGGAAAAACATCGTCT CACTCCTGCTGAGCATGCTGGGACACGACGAGGTACAGCAGGACAATACTCGCATCTCCT CAGCCGGGTGCTTGGGGGAACTGTGTGCCTTTCTGACGGAAGAGGAGCTAAGCGCCGTTC TTCAGCAGTGCTTGCTCGCGGACGTGTCCGGCATTGACTGGATGGTTCGGCATGGGCGGA GCCTGGCTCTATCCGTGGCTGTGAATGTGGCTCCCAGCAGACTCTGCACAGGAAAATACA GCAGTGAAGTTCAGGACATGATCCTCAGCAATGCCATGGCAGACAGGATCCCCATTGCTG TGAGCGGGGTCCGGGGCATGGGCTTTCTGATGAAGTATCACGTCGAAACAGGAGGAGGAC AGTTGCCAGCCAAACTCTCCAGCCTGTTCATTAAGTGTCTGCAGAACCCATCCAGTGACA TCAGGCTGGTGGCTGAGAAGATGATCTGGTGGGCAAACAAAGACCCACTGCCTGCCCTGG ACCCCCAGGCCATCAAGCCCATCCTGAAGGCTCTTCTGGACAACACCAAGGATAAAAACA CTGTTGTAAGGGCTTACAGTGACCAGGCGATTGTCAACCTCCTCAAAATGAGGCAGGGAG AAGAGGTGTTTCAGTCCCTCTGCAAGATCCTGGATGTGGCCAGCTTGGAGGTGCTGAATG AGTGCAACCGAAGGTCCTTGAAGAAGCTGGCCGGCCAGGCGGACTCCACGGAGCAGGTGG ATGACACCATCCTGACCTGACAGGCCTGGGCCTGTCCCCTGGGCTCCGCATCAGCATTTC AGCTCCACCTCTCTGTTAGTGTTTTCATTTTTGAAAATACGTTTGTTCTGATGGGGAGCT TAAGAGATGGTGTTCCCAGAAAGTATTTTAATATATCAACAGACCACAGCCAAAGCCTTA AGTCAACCCCCCCCACACACACACACACAACTGAAAATTGCCTCCTCCATCTCTCACCCT TTTCTTTGGAGAAGAGAAGAAAAAGCACATGTCTGAGCCTCACTCAGTTGGTAGCCAGGA GCTGCTCGTCTGCTCTGCGTGGATAGGTCTGGAACAAAGAAGCTTGGACTTCTGCTTCCT GGTCTCTTGTGCTCAAGTGCTGGTTCCAGGGCCAGTGCTGCCAACCTTTGCCTAGATCCT GAGGGGGGCACGGAACCGTGGAGGTCTGCCCAGGGTGGTTTGTCTCAGAGTGGCTTCTCA GCATTGTGCGGCCTGACCGGATCTGACCCGTCAGGTGCCAATGACACACACAGCCCTGGA AGTTCGAGAGTCGGGGAGGGTTATAGGTTTAAACACAGATGGTTTGAGGAAGAATGTTTA ATAAAGGCTTTGAATTGATCTTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAACGGAATCCGTGTCATGGAGGACCCGGGTGTCAGGGACACCATGCTGCAGGCCCTGA GGTTTGTGATTCAGGGAGCAGGGGCCAAAGTGGATGTGGTCATCCGGAAAAACATCGTCT CACTCCTGCTGAGCATGCTGGGACACGACGAGGTACAGCAGGACAATACTCGCATCTCCT CAGCCGGGTGCTTGGGGGAACTGTGTGCCTTTCTGACGGAAGAGGAGCTAAGCGCCGTTC TTCAGCAGTGCTTGCTCGCGGACGTGTCCGGCATTGACTGGATGGTTCGGCATGGGCGGA GCCTGGCTCTATCCGTGGCTGTGAATGTGGCTCCCAGCAGACTCTGCACAGGAAAATACA GCAGTGAAGTTCAGGACATGATCCTCAGCAATGCCATGGCAGACAGGATCCCCATTGCTG TGAGCGGGGTCCGGGGCATGGGCTTTCTGATGAAGTATCACGTCGAAACAGGAGGAGGAC AGTTGCCAGCCAAACTCTCCAGCCTGTTCATTAAGTGTCTGCAGAACCCATCCAGTGACA TCAGGCTGGTGGCTGAGAAGATGATCTGGTGGGCAAACAAAGACCCACTGCCTGCCCTGG ACCCCCAGGCCATCAAGCCCATCCTGAAGGCTCTTCTGGACAACACCAAGGATAAAAACA CTGTTGTAAGGGCTTACAGTGACCAGGCGATTGTCAACCTCCTCAAAATGAGGCAGGGAG AAGAGGTGTTTCAGTCCCTCTGCAAGATCCTGGATGTGGCCAGCTTGGAGGTGCTGAATG AGTGCAACCGAAGGTCCTTGAAGAAGCTGGCCGGCCAGGCGGACTCCACGGAGCAGGTGG ATGACACCATCCTGACCTGACAGGCCTGGGCCTGTCCCCTGGGCTCCGCATCAGCATTTC AGCTCCACCTCTCTGTTAGTGTTTTCATTTTTGAAAATACGTTTGTTCTGATGGGGAGCT TAAGAGATGGTGTTCCCAGAAAGTATTTTAATATATCAACAGACCACAGCCAAAGCCTTA AGTCAACCCCCCCCACACACACACACACAACTGAAAATTGCCTCCTCCATCTCTCACCCT TTTCTTTGGAGAAGAGAAGAAAAAGCACATGTCTGAGCCTCACTCAGTTGGTAGCCAGGA GCTGCTCGTCTGCTCTGCGTGGATAGGTCTGGAACAAAGAAGCTTGGACTTCTGCTTCCT GGTCTCTTGTGCTCAAGTGCTGGTTCCAGGGCCAGTGCTGCCAACCTTTGCCTAGATCCT GAGGGGGGCACGGAACCGTGGAGGTCTGCCCAGGGTGGTTTGTCTCAGAGTGGCTTCTCA GCATTGTGCGGCCTGACCGGATCTGACCCGTCAGGTGCCAATGACACACACAGCCCTGGA AGTTCGAGAGTCGGGGAGGGTTATAGGTTTAAACACAGATGGTTTGAGGAAGAATGTTTA ATAAAGGCTTTGAATTGATCTTGAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 851-967, - strand, RNAz p=0.995389 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 851-967, - strand, RNAz p=0.995389 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 35-159, gnl|bosTau2|chr17 (38512612-38512736) | |
| 35-159, gnl|canFam2|chr26 (19120672-19120814) | |
| 35-159, gnl|echTel1|scaffold_293196 (6486-6633) | |
| 35-159, gnl|fr1|chrUn (56607531-56607666) | |
| 35-159, gnl|galGal2|chr15 (9396840-9396692) | |
| 35-159, gnl|hg17|chr12 (119034800-119034944) | |
| 35-159, gnl|Hg17|chr12 (119034932-119034808) | |
| 35-159, gnl|loxAfr1|scaffold_2359 (16724-16866) | |
| 35-159, gnl|mm7|chr5 (114838684-114838542) | |
| 35-159, gnl|Mm7|chr5 (114838552-114838676) | |
| 35-159, gnl|monDom2|scaffold_101 (143707-143570) | |
| 35-159, gnl|oryCun1|scaffold_204309 (124525-124383) | |
| 35-159, gnl|panTro1|chr10 (122034765-122034909) | |
| 35-159, gnl|rheMac2|chr11 (121135062-121135206) | |
| 35-159, gnl|rn3|chr12 (42122411-42122553) | |
| 35-159, gnl|tetNig1|chr12 (11749535-11749679) | |
| 35-159, gnl|xenTro1|scaffold_9 (4626592-4626717) | |
| 258-407, gnl|bosTau2|chr17 (38514969-38515118) | |
| 258-407, gnl|canFam2|chr26 (19117881-19118072) | |
| 258-407, gnl|echTel1|scaffold_293196 (4070-4259) | |
| 258-407, gnl|fr1|chrUn (56606746-56606910) | |
| 258-407, gnl|galGal2|chr15 (9399065-9398908) | |
| 258-407, gnl|hg17|chr12 (119031695-119031887) | |
| 258-407, gnl|Hg17|chr12 (119031858-119031709) | |
| 258-407, gnl|loxAfr1|scaffold_2359 (13780-13973) | |
| 258-407, gnl|mm7|chr5 (114841729-114841546) | |
| 258-407, gnl|Mm7|chr5 (114841572-114841721) | |
| 258-407, gnl|monDom2|scaffold_101 (146130-145951) | |
| 258-407, gnl|oryCun1|scaffold_204309 (126971-126789) | |
| 258-407, gnl|panTro1|chr10 (122031659-122031851) | |
| 258-407, gnl|rheMac2|chr11 (121131767-121131959) | |
| 258-407, gnl|rn3|chr12 (42119361-42119544) | |
| 258-407, gnl|tetNig1|chr12 (11748888-11749058) | |
| 258-407, gnl|xenTro1|scaffold_9 (4622724-4622898) | |
| 732-1467, gnl|bosTau2|chr17 (38517572-38518297) | |
| 732-1467, gnl|Hg17|chr12 (119028501-119027787) | |
| 732-1467, gnl|Mm7|chr5 (114843943-114844575) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-159, gnl|bosTau2|chr17 (38512612-38512736) | |
| 35-159, gnl|canFam2|chr26 (19120672-19120814) | |
| 35-159, gnl|echTel1|scaffold_293196 (6486-6633) | |
| 35-159, gnl|fr1|chrUn (56607531-56607666) | |
| 35-159, gnl|galGal2|chr15 (9396840-9396692) | |
| 35-159, gnl|hg17|chr12 (119034800-119034944) | |
| 35-159, gnl|Hg17|chr12 (119034932-119034808) | |
| 35-159, gnl|loxAfr1|scaffold_2359 (16724-16866) | |
| 35-159, gnl|mm7|chr5 (114838684-114838542) | |
| 35-159, gnl|Mm7|chr5 (114838552-114838676) | |
| 35-159, gnl|monDom2|scaffold_101 (143707-143570) | |
| 35-159, gnl|oryCun1|scaffold_204309 (124525-124383) | |
| 35-159, gnl|panTro1|chr10 (122034765-122034909) | |
| 35-159, gnl|rheMac2|chr11 (121135062-121135206) | |
| 35-159, gnl|rn3|chr12 (42122411-42122553) | |
| 35-159, gnl|tetNig1|chr12 (11749535-11749679) | |
| 35-159, gnl|xenTro1|scaffold_9 (4626592-4626717) | |
| 258-407, gnl|bosTau2|chr17 (38514969-38515118) | |
| 258-407, gnl|canFam2|chr26 (19117881-19118072) | |
| 258-407, gnl|echTel1|scaffold_293196 (4070-4259) | |
| 258-407, gnl|fr1|chrUn (56606746-56606910) | |
| 258-407, gnl|galGal2|chr15 (9399065-9398908) | |
| 258-407, gnl|hg17|chr12 (119031695-119031887) | |
| 258-407, gnl|Hg17|chr12 (119031858-119031709) | |
| 258-407, gnl|loxAfr1|scaffold_2359 (13780-13973) | |
| 258-407, gnl|mm7|chr5 (114841729-114841546) | |
| 258-407, gnl|Mm7|chr5 (114841572-114841721) | |
| 258-407, gnl|monDom2|scaffold_101 (146130-145951) | |
| 258-407, gnl|oryCun1|scaffold_204309 (126971-126789) | |
| 258-407, gnl|panTro1|chr10 (122031659-122031851) | |
| 258-407, gnl|rheMac2|chr11 (121131767-121131959) | |
| 258-407, gnl|rn3|chr12 (42119361-42119544) | |
| 258-407, gnl|tetNig1|chr12 (11748888-11749058) | |
| 258-407, gnl|xenTro1|scaffold_9 (4622724-4622898) | |
| 732-1467, gnl|bosTau2|chr17 (38517572-38518297) | |
| 732-1467, gnl|Hg17|chr12 (119028501-119027787) | |
| 732-1467, gnl|Mm7|chr5 (114843943-114844575) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| nco (0.323468) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pgl (0.236967) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cmu (0.186393) | |
| cki (0.165235) | |
| csp (0.161186) | |
| liv (0.146284) | |
| pty (0.142714) | |
| pla (0.133672) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.323468) | |
| cag (0.302389) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pgl (0.236967) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| col (0.195008) | |
| cmu (0.186393) | |
| cki (0.165235) | |
| csp (0.161186) | |
| liv (0.146284) | |
| pty (0.142714) | |
| pla (0.133672) | |
| eru (0.120048) | |
| jca (0.11396) |