Non-Coding RNA Search

Ss1.1-Pig4-TMW8049M21.3

Sequence:


               
               CTTTGCAAGACCATCTCATGAGGCTCCCAAACCACAGATGTACCACAGCAAGAATACACT
TCCTTTCATTAGCCACCGTGCGTAAGGACATTTGACAGTGGGCTTGGATTTCATGGTATA
CATTGTTTATTCTTGGGCCAGCCTGAAAGAAATGAAGCATTAGCAACGTGAAGTGCACGT
ATCTTCTTTCGTAGATGAATACGCACTGAATGATTTGGCATGTACCCAAACCTGTGATCC
CAGGTTACAAAAATTAAGTTAGTGTGATTTTAGAAGTCTCAAAACCCAGGACAATGCAAG
AGCAGTATTTAAAAATACATACACATGTGTGTGTTCACATGATTCAAAAATGTCTCGAGT
GATTTTGGGAGCTGCCTAGAAGTCCTTTAAAAAAGCACTTGTATCACTGTCCTCCGATTT
TTTCTTTTTAAGTCAATTGTGATTTGAAACAAAATGAAAATGAGCCAGACATTCAAAAAA
GATCTTGGATACAAATTAAGAATTTTATCTTAAACAAAATAGAGAGTAAATTGGAGAAAA
AGGAATTTAGCTTGCATTTTAACCTCTATGAAGAGCACAGAAGGTAGGAGAAGGCAGTCT
GCGTTTCTGATGCCTTTAGGCATCACATGGGGAAATACTGTCTCCGTTTGGGAAAAGAAA
AAGTGAAATCCTGTTTATGTAGGTGTCTACATGTAGAGTTTTTCCCAAAGCCATTTCAAT
TGTATTTATGAGGTGGTTTTGTTTTTTATCATCTCATTGTATGTTTTAAGTGCCTTTTTA
TATAAAGTGTGAACTTCTAGAGTTTCAAGAGTATATAAGACTAAGTGGCATTGTATTTTT
ATAACCTCACTAAGAAGACTAAGAAATGAAATACCATACCAATTTTTACTTTTTTTATGC
TTCAAACAATAAAGACGTTTTACATTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCAAGACCATCTCATGAGGCTCCCAAACCACAGATGTACCACAGCAAGAATACACT
TCCTTTCATTAGCCACCGTGCGTAAGGACATTTGACAGTGGGCTTGGATTTCATGGTATA
CATTGTTTATTCTTGGGCCAGCCTGAAAGAAATGAAGCATTAGCAACGTGAAGTGCACGT
ATCTTCTTTCGTAGATGAATACGCACTGAATGATTTGGCATGTACCCAAACCTGTGATCC
CAGGTTACAAAAATTAAGTTAGTGTGATTTTAGAAGTCTCAAAACCCAGGACAATGCAAG
AGCAGTATTTAAAAATACATACACATGTGTGTGTTCACATGATTCAAAAATGTCTCGAGT
GATTTTGGGAGCTGCCTAGAAGTCCTTTAAAAAAGCACTTGTATCACTGTCCTCCGATTT
TTTCTTTTTAAGTCAATTGTGATTTGAAACAAAATGAAAATGAGCCAGACATTCAAAAAA
GATCTTGGATACAAATTAAGAATTTTATCTTAAACAAAATAGAGAGTAAATTGGAGAAAA
AGGAATTTAGCTTGCATTTTAACCTCTATGAAGAGCACAGAAGGTAGGAGAAGGCAGTCT
GCGTTTCTGATGCCTTTAGGCATCACATGGGGAAATACTGTCTCCGTTTGGGAAAAGAAA
AAGTGAAATCCTGTTTATGTAGGTGTCTACATGTAGAGTTTTTCCCAAAGCCATTTCAAT
TGTATTTATGAGGTGGTTTTGTTTTTTATCATCTCATTGTATGTTTTAAGTGCCTTTTTA
TATAAAGTGTGAACTTCTAGAGTTTCAAGAGTATATAAGACTAAGTGGCATTGTATTTTT
ATAACCTCACTAAGAAGACTAAGAAATGAAATACCATACCAATTTTTACTTTTTTTATGC
TTCAAACAATAAAGACGTTTTACATTTAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-934, gnl|bosTau2|chr5 (12688200-12689117)
               

               
               7-934, gnl|Hg17|chr12 (88316886-88315963)
               

               
               7-934, gnl|Mm7|chr10 (98758649-98759478)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-934, gnl|bosTau2|chr5 (12688200-12689117)
               

               
               7-934, gnl|Hg17|chr12 (88316886-88315963)
               

               
               7-934, gnl|Mm7|chr10 (98758649-98759478)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               mga (0.160205)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

	7-934, gnl\|bosTau2\|chr5 (12688200-12689117)
	7-934, gnl\|Hg17\|chr12 (88316886-88315963)
	7-934, gnl\|Mm7\|chr10 (98758649-98759478)

	mga (0.160205)
	pty (0.142714)
	lnt (0.142308)
	ute (0.132784)
	tra (0.123092)
	jej (0.0989218)