Non-Coding RNA Search

Ss1.1-Pig4-TMW8049M22.3.5

Sequence:


               
               TATAAAATTGGCTCCAAGGTCATTAAGATCGCTTGGGCTTTAAACAAAGGTGTAAAAACA
GAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACGTATATACCATGGGAAAAAGTT
AAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAAACTGTAAAT
ACTGAGTGGGAAACTGTGAAAAGCTCAGAACCGGTTAAAGAGACGGTCCAGACGACTCAG
AGTCCCCCTCCAGTTGAAAAGGAAACAGTGGTCACGACCCAGGCAGAGGTTTTCCCTCCG
CCTGTTGCTATGTTACAGATTCCAGTAGCTCCAGCAGTGCCTGCAGTTAGTTTAGTCCCA
CCAGCATTTCCTGTGTCAATGCCAGTTCCTCCTCCTGGATTCAGTCCAATTCCTCCACCT
CCTTTTCTCCGAGCAAGTTTTAACCCTTCACAACCACCTCCTGGTTTCATGCCACCTCCA
GTTCCACCACCTGTTGTACCACCACCTACTATCCCACCAGTAGTACCAACATCTTTAGTG
CAGCCACCATTATCTATGACTCCAGAAACTGTGAAAGATGTTGGATTTGGTAGCCTTGTT
TTACCAGGTGGTTCTGTTGCCAGCAGTCTTGCTACTTCCACTCTGCCAGCCGGAAGTGTT
TTTAATCCTCCAACTAAACAAGCAGAGCCTGAAGAAAAAGTACCTCATCTTTTAGACCAC
CAGATTTCTTCTGGTGAAAACACCAGATCAGTGATTCCAAATGATATTTCAAGCAACTCT
GCAATTTTAGGAGGACAGCCGCCAAATGTGACAAGCAATTCTGGGATTCTGGGAGTCCAA
AGACCAAATGTATCAAGTAATAATGAAATCCTTGGAGTCCGGCCGTCTAATGTTTCCAGT
GGTTCTGGGATTATTGGACCCCAGCCACCAACTATTCTAAATAACTCTGGAATTTTGGGA
ATACAGCCACCAAGTGTGTCGAGTAGTTCTGGACTTTTGGGGGTGCTTCCCCCAAATATA
CCTAACAGTTCTGGACTCATAGGAGTACAGCCACCCGGGGTTCCAAATCCTGGACTGTTG
GGAACACAGCCACCAGCTGGGCCTCAAAATTTGCCCCCTTTGAATCTTTCTAATCAAAGG
ATGCCTGCAATGCCAATCTTAGACATTCGTCCAGGACTCATACCACAGACTCCTGGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATAAAATTGGCTCCAAGGTCATTAAGATCGCTTGGGCTTTAAACAAAGGTGTAAAAACA
GAATACAAACAATTCTGGGATGTGGATCTTGGAGTTACGTATATACCATGGGAAAAAGTT
AAAGTGGATGACTTGGAAGGTTTTGCAGAAGGAGGCATGATTGATCAGGAAACTGTAAAT
ACTGAGTGGGAAACTGTGAAAAGCTCAGAACCGGTTAAAGAGACGGTCCAGACGACTCAG
AGTCCCCCTCCAGTTGAAAAGGAAACAGTGGTCACGACCCAGGCAGAGGTTTTCCCTCCG
CCTGTTGCTATGTTACAGATTCCAGTAGCTCCAGCAGTGCCTGCAGTTAGTTTAGTCCCA
CCAGCATTTCCTGTGTCAATGCCAGTTCCTCCTCCTGGATTCAGTCCAATTCCTCCACCT
CCTTTTCTCCGAGCAAGTTTTAACCCTTCACAACCACCTCCTGGTTTCATGCCACCTCCA
GTTCCACCACCTGTTGTACCACCACCTACTATCCCACCAGTAGTACCAACATCTTTAGTG
CAGCCACCATTATCTATGACTCCAGAAACTGTGAAAGATGTTGGATTTGGTAGCCTTGTT
TTACCAGGTGGTTCTGTTGCCAGCAGTCTTGCTACTTCCACTCTGCCAGCCGGAAGTGTT
TTTAATCCTCCAACTAAACAAGCAGAGCCTGAAGAAAAAGTACCTCATCTTTTAGACCAC
CAGATTTCTTCTGGTGAAAACACCAGATCAGTGATTCCAAATGATATTTCAAGCAACTCT
GCAATTTTAGGAGGACAGCCGCCAAATGTGACAAGCAATTCTGGGATTCTGGGAGTCCAA
AGACCAAATGTATCAAGTAATAATGAAATCCTTGGAGTCCGGCCGTCTAATGTTTCCAGT
GGTTCTGGGATTATTGGACCCCAGCCACCAACTATTCTAAATAACTCTGGAATTTTGGGA
ATACAGCCACCAAGTGTGTCGAGTAGTTCTGGACTTTTGGGGGTGCTTCCCCCAAATATA
CCTAACAGTTCTGGACTCATAGGAGTACAGCCACCCGGGGTTCCAAATCCTGGACTGTTG
GGAACACAGCCACCAGCTGGGCCTCAAAATTTGCCCCCTTTGAATCTTTCTAATCAAAGG
ATGCCTGCAATGCCAATCTTAGACATTCGTCCAGGACTCATACCACAGACTCCTGGGCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               26-130, + strand, RNAz p=0.516495

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               26-130, + strand, RNAz p=0.516495

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               26-184, gnl|bosTau2|chr9 (54309490-54309332)
               

               
               26-184, gnl|canFam2|chr1 (47669532-47669703)
               

               
               26-184, gnl|danRer3|chrNA (34462749-34462586)
               

               
               26-184, gnl|dasNov1|scaffold_14277 (9979-10155)
               

               
               26-184, gnl|echTel1|scaffold_212675 (5190-5353)
               

               
               26-184, gnl|fr1|chrUn (120069704-120069873)
               

               
               26-184, gnl|galGal2|chr3 (49300264-49300432)
               

               
               26-184, gnl|hg17|chr6 (155233413-155233584)
               

               
               26-184, gnl|Hg17|chr6 (155233422-155233580)
               

               
               26-184, gnl|loxAfr1|scaffold_5893 (51460-51289)
               

               
               26-184, gnl|mm7|chr17 (3187579-3187750)
               

               
               26-184, gnl|Mm7|chr17 (3187588-3187746)
               

               
               26-184, gnl|monDom2|scaffold_0 (49955134-49954971)
               

               
               26-184, gnl|oryCun1|scaffold_201260 (147672-147848)
               

               
               26-184, gnl|panTro1|chr5 (158791381-158791552)
               

               
               26-184, gnl|rheMac2|chr4 (108151740-108151569)
               

               
               26-184, gnl|rn3|chr1 (38165916-38166087)
               

               
               26-184, gnl|tetNig1|chr10 (2672687-2672511)
               

               
               26-184, gnl|xenTro1|scaffold_124 (681236-681065)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-184, gnl|bosTau2|chr9 (54309490-54309332)
               

               
               26-184, gnl|canFam2|chr1 (47669532-47669703)
               

               
               26-184, gnl|danRer3|chrNA (34462749-34462586)
               

               
               26-184, gnl|dasNov1|scaffold_14277 (9979-10155)
               

               
               26-184, gnl|echTel1|scaffold_212675 (5190-5353)
               

               
               26-184, gnl|fr1|chrUn (120069704-120069873)
               

               
               26-184, gnl|galGal2|chr3 (49300264-49300432)
               

               
               26-184, gnl|hg17|chr6 (155233413-155233584)
               

               
               26-184, gnl|Hg17|chr6 (155233422-155233580)
               

               
               26-184, gnl|loxAfr1|scaffold_5893 (51460-51289)
               

               
               26-184, gnl|mm7|chr17 (3187579-3187750)
               

               
               26-184, gnl|Mm7|chr17 (3187588-3187746)
               

               
               26-184, gnl|monDom2|scaffold_0 (49955134-49954971)
               

               
               26-184, gnl|oryCun1|scaffold_201260 (147672-147848)
               

               
               26-184, gnl|panTro1|chr5 (158791381-158791552)
               

               
               26-184, gnl|rheMac2|chr4 (108151740-108151569)
               

               
               26-184, gnl|rn3|chr1 (38165916-38166087)
               

               
               26-184, gnl|tetNig1|chr10 (2672687-2672511)
               

               
               26-184, gnl|xenTro1|scaffold_124 (681236-681065)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ese (0.126502)

	26-184, gnl\|bosTau2\|chr9 (54309490-54309332)
	26-184, gnl\|canFam2\|chr1 (47669532-47669703)
	26-184, gnl\|danRer3\|chrNA (34462749-34462586)
	26-184, gnl\|dasNov1\|scaffold_14277 (9979-10155)
	26-184, gnl\|echTel1\|scaffold_212675 (5190-5353)
	26-184, gnl\|fr1\|chrUn (120069704-120069873)
	26-184, gnl\|galGal2\|chr3 (49300264-49300432)
	26-184, gnl\|hg17\|chr6 (155233413-155233584)
	26-184, gnl\|Hg17\|chr6 (155233422-155233580)
	26-184, gnl\|loxAfr1\|scaffold_5893 (51460-51289)
	26-184, gnl\|mm7\|chr17 (3187579-3187750)
	26-184, gnl\|Mm7\|chr17 (3187588-3187746)
	26-184, gnl\|monDom2\|scaffold_0 (49955134-49954971)
	26-184, gnl\|oryCun1\|scaffold_201260 (147672-147848)
	26-184, gnl\|panTro1\|chr5 (158791381-158791552)
	26-184, gnl\|rheMac2\|chr4 (108151740-108151569)
	26-184, gnl\|rn3\|chr1 (38165916-38166087)
	26-184, gnl\|tetNig1\|chr10 (2672687-2672511)
	26-184, gnl\|xenTro1\|scaffold_124 (681236-681065)