Non-Coding RNA Search

Ss1.1-Pig4-TMW8049N05.3

Sequence:


               
               GTCCTATCCCTTCCCGGATGATCCGAAAGACAAGGAAGCAGAAATATTTTTACCGGGGTC
GCCTGGATTGGGATGAGAACACATCAGCTGGGCGCTACGTGCGAGAAAACTGCAAACCAC
TTCGGCGGTATCTGACCTCAGAGGCAGAAGAACACCACCAGCTCTTCGATCTGATTGAAA
GCATGCTAGAATATGAACCTGCTAAGCGGCTGACCTTGGGTGAAGCCCTTCAGCACCCTT
TCTTCGCCCGCCTTCGGGCTGAGCCACCTAACGCCAAGTTGTGGGACTCCAGTCGGGATA
TCAGTCGGTGACGATCAGGCCCTGGGCCCCCCTGCGTTTCTGACAGCAGTGGGTGTCCAG
TCCAGGACACTGGTGCTTTTTTATACAAGAGAACAGAACCGGAGCCCACTCCTTCCTCCT
GGCTCCGTGTGTACCTGTGAATATGTGAAATAGTGTAAATATGAAAGAACTTAATACCTA
TTGCTTCAACCCCTGCCTTGTACATAATGCTGTCCCATCTCACACTCTTCCCGCCCTCAC
CTGCCCCTTCACAGTTGAGTTGGATGGGGGCAGAATGAGGTAACCAGGTGGCATCAATCC
CATGTTTTATAAGGAATTTTGTACAGTCTTTGTGAAATAAAATGACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTATCCCTTCCCGGATGATCCGAAAGACAAGGAAGCAGAAATATTTTTACCGGGGTC
GCCTGGATTGGGATGAGAACACATCAGCTGGGCGCTACGTGCGAGAAAACTGCAAACCAC
TTCGGCGGTATCTGACCTCAGAGGCAGAAGAACACCACCAGCTCTTCGATCTGATTGAAA
GCATGCTAGAATATGAACCTGCTAAGCGGCTGACCTTGGGTGAAGCCCTTCAGCACCCTT
TCTTCGCCCGCCTTCGGGCTGAGCCACCTAACGCCAAGTTGTGGGACTCCAGTCGGGATA
TCAGTCGGTGACGATCAGGCCCTGGGCCCCCCTGCGTTTCTGACAGCAGTGGGTGTCCAG
TCCAGGACACTGGTGCTTTTTTATACAAGAGAACAGAACCGGAGCCCACTCCTTCCTCCT
GGCTCCGTGTGTACCTGTGAATATGTGAAATAGTGTAAATATGAAAGAACTTAATACCTA
TTGCTTCAACCCCTGCCTTGTACATAATGCTGTCCCATCTCACACTCTTCCCGCCCTCAC
CTGCCCCTTCACAGTTGAGTTGGATGGGGGCAGAATGAGGTAACCAGGTGGCATCAATCC
CATGTTTTATAAGGAATTTTGTACAGTCTTTGTGAAATAAAATGACGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               244-437, - strand, RNAz p=0.962297
               

               
               478-648, - strand, RNAz p=0.650589

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-437, - strand, RNAz p=0.962297
               

               
               478-648, - strand, RNAz p=0.650589

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               326-419, - strand, RNAmicro p=0.960177

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               326-419, - strand, RNAmicro p=0.960177

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               125-648, gnl|bosTau2|chr3 (10309120-10309643)
               

               
               125-648, gnl|Hg17|chr1 (152046265-152045749)
               

               
               125-648, gnl|Mm7|chr3 (89302803-89303320)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               125-648, gnl|bosTau2|chr3 (10309120-10309643)
               

               
               125-648, gnl|Hg17|chr1 (152046265-152045749)
               

               
               125-648, gnl|Mm7|chr3 (89302803-89303320)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lun (0.150489)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lun (0.150489)

	244-437, - strand, RNAz p=0.962297
	478-648, - strand, RNAz p=0.650589

	125-648, gnl\|bosTau2\|chr3 (10309120-10309643)
	125-648, gnl\|Hg17\|chr1 (152046265-152045749)
	125-648, gnl\|Mm7\|chr3 (89302803-89303320)