Non-Coding RNA Search

Ss1.1-Pig4-TMW8049N17.3

Sequence:


               
               CTCATCCAGTACATCCACGACAACTACTTCCTGGTCAACCTGGTGGACAACGAGTTTCCG
CTGGACAACTGCCTCTGGCAGGTGGTGGAGGACACATTTGAGCTTCTCAACAGGCCCCCC
CACAACGAGAAGGAGCCCGAGGCCAGTGACCCTGCGCCCTGAGACCCTTCGCGTGAGGCT
ACCGTGTCCCACCTTCCGCCTCCCCGTCCCGGCTCTTCTGGGGACTCCTGTTCTTCGCTT
CTTCCCAGCCCTGGCCTCCCCCCATGATGCTGGCAGCTGGACTGGGGGGCTTCCGGCTCT
GGCTGGACCTGAGTCCGCCCCACATGGGAGCCTGGTGTTCCCCGCTCAGCCGAGTCTGGG
CTCTTGGTGGGGAGCAGCCCCCCGACCCCCACAAAGGACCCCTGTGGGCAGAATGCCGTC
CTCCCTGAGAAGGGGTGTTGCTGACAGAGCCCCTGGGAGCCGGCCTGGGGCTGCGGTGAC
CTTGCTCTTGGGGCCTGTGGGATGGGGACACCAAGCACGCAGCAGGCACAGTGGGACTGC
TGGCACTGCGGAGGAGACAAAGTCAAGGTACCGCACCCTTCCGCCTCCAAGGCGTTGGCA
GCCGAGCACCCCCGCTTGCGATTGAAGGAGTGACCACTGCCTGCCAACGCCCCGTTGGGC
ACGAACCCTGGACGGACCTGGGGCTGAAACCTGATCACGGTCCCTGCCCGCTCTTGGCCG
AGAGCTCAGCTGGACTGTTCCTTTTCTACACGCCTTTTTCACACAGCTGTCTCTGTGTTC
CTGTGGCTCAAGAAAGCACCTCTTCAGGGTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCCAGTACATCCACGACAACTACTTCCTGGTCAACCTGGTGGACAACGAGTTTCCG
CTGGACAACTGCCTCTGGCAGGTGGTGGAGGACACATTTGAGCTTCTCAACAGGCCCCCC
CACAACGAGAAGGAGCCCGAGGCCAGTGACCCTGCGCCCTGAGACCCTTCGCGTGAGGCT
ACCGTGTCCCACCTTCCGCCTCCCCGTCCCGGCTCTTCTGGGGACTCCTGTTCTTCGCTT
CTTCCCAGCCCTGGCCTCCCCCCATGATGCTGGCAGCTGGACTGGGGGGCTTCCGGCTCT
GGCTGGACCTGAGTCCGCCCCACATGGGAGCCTGGTGTTCCCCGCTCAGCCGAGTCTGGG
CTCTTGGTGGGGAGCAGCCCCCCGACCCCCACAAAGGACCCCTGTGGGCAGAATGCCGTC
CTCCCTGAGAAGGGGTGTTGCTGACAGAGCCCCTGGGAGCCGGCCTGGGGCTGCGGTGAC
CTTGCTCTTGGGGCCTGTGGGATGGGGACACCAAGCACGCAGCAGGCACAGTGGGACTGC
TGGCACTGCGGAGGAGACAAAGTCAAGGTACCGCACCCTTCCGCCTCCAAGGCGTTGGCA
GCCGAGCACCCCCGCTTGCGATTGAAGGAGTGACCACTGCCTGCCAACGCCCCGTTGGGC
ACGAACCCTGGACGGACCTGGGGCTGAAACCTGATCACGGTCCCTGCCCGCTCTTGGCCG
AGAGCTCAGCTGGACTGTTCCTTTTCTACACGCCTTTTTCACACAGCTGTCTCTGTGTTC
CTGTGGCTCAAGAAAGCACCTCTTCAGGGTCAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-814, gnl|bosTau2|chr16 (21527766-21528586)
               

               
               2-814, gnl|Hg17|chr1 (11785151-11784349)
               

               
               2-814, gnl|Mm7|chr4 (147044985-147045736)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-814, gnl|bosTau2|chr16 (21527766-21528586)
               

               
               2-814, gnl|Hg17|chr1 (11785151-11784349)
               

               
               2-814, gnl|Mm7|chr4 (147044985-147045736)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

	2-814, gnl\|bosTau2\|chr16 (21527766-21528586)
	2-814, gnl\|Hg17\|chr1 (11785151-11784349)
	2-814, gnl\|Mm7\|chr4 (147044985-147045736)