Non-Coding RNA Search

Ss1.1-Pig4-TMW8049N19.3

Sequence:


               
               GAAACCTCCTCTGCCTGCTTATGATTTTCTAAGTATGATAGATGCTGCAGCATCTCAACA
TCCTACTAGGAAAGTTTCTGAGTGTATAAAAGAAACTGATGTGCAGGAAAATTATAAAGA
ACAGCCTGAAGATCAATCAGCAATCAGAAAAGAATCAACTGGAATATTGAGAATGAAACA
CTGGGATAGAAGTAACTGGTTTGAAGAAGCAAAGAAACCATTCAGGCATGACAATAAAGA
ATTATGATGCTCAAAAATGAGCTAGTTTTATAGGGCTGTGGAACACTTTCCAGAGCCTTT
TTGGCTTATTTTATAGACTTAAGAATTTATTTCATTAAAAAATAACCTTACATCAGCCAG
AATGGCCATCATCAAAAAGTCTACAAACAATCAATGCTGGAGAGGGTGCAGAGAAAAGAG
AACCCTCTTACACTGTTGGTGGGAATGTAAACTGGTGCAACCACTATGGAAAACAGTATA
GCGGTTCCCCAAGAAACTAAAAATAGAACTACCATATGATCCAGCAATCCTACTCCTGGG
CGTCTTTCTGGAGAAAACCATAATTCGAAAAGATATATGCATCCCAGTGTTCATTTCATC
ACTATTTACAATAGCCAAGACATGGAAGCAACCTAAATGTCCATCAAGAGAGGAATGGCT
AAACATGTAGTACATATATACAATGGAATATTAGGAAAAAAGAATGAAATAAGCCATTTG
CAGCAACATGGATGGACTTAGAGATTATCATACTAAGTGAAGTTAGTGAAAGACAAACAT
CATATCACTTATGTGTGGAATCTTAAAAAAGAATACAAATGAACTTGTTTGTGAACAGAC
TGACTCATAGACTTTGAAAAACTTATGGTTACCAAAGGGGACAGATGGTTGTGGGGGGAA
GACGGAGGGTTTGGGCTTGTCATATCCACACTGTGTATATGGAATGATTGGCCAGTGGGG
ACCTGCTGTATAGCTCAAGGAGCTCTACCCAGTATTCTGTGATGGTCTATATGGGAAAAG
AATCTGAAAGAGAATGGATGTGTGTATATGTATAACTGAATCACTTTGACAGCAGAAATT
ATCACAATCTTATGAATCAACTATACATCAATACAACTTTAAAAAAATGGGAAAAAAGCA
ATACTAAATCATTTCAAGTTTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACCTCCTCTGCCTGCTTATGATTTTCTAAGTATGATAGATGCTGCAGCATCTCAACA
TCCTACTAGGAAAGTTTCTGAGTGTATAAAAGAAACTGATGTGCAGGAAAATTATAAAGA
ACAGCCTGAAGATCAATCAGCAATCAGAAAAGAATCAACTGGAATATTGAGAATGAAACA
CTGGGATAGAAGTAACTGGTTTGAAGAAGCAAAGAAACCATTCAGGCATGACAATAAAGA
ATTATGATGCTCAAAAATGAGCTAGTTTTATAGGGCTGTGGAACACTTTCCAGAGCCTTT
TTGGCTTATTTTATAGACTTAAGAATTTATTTCATTAAAAAATAACCTTACATCAGCCAG
AATGGCCATCATCAAAAAGTCTACAAACAATCAATGCTGGAGAGGGTGCAGAGAAAAGAG
AACCCTCTTACACTGTTGGTGGGAATGTAAACTGGTGCAACCACTATGGAAAACAGTATA
GCGGTTCCCCAAGAAACTAAAAATAGAACTACCATATGATCCAGCAATCCTACTCCTGGG
CGTCTTTCTGGAGAAAACCATAATTCGAAAAGATATATGCATCCCAGTGTTCATTTCATC
ACTATTTACAATAGCCAAGACATGGAAGCAACCTAAATGTCCATCAAGAGAGGAATGGCT
AAACATGTAGTACATATATACAATGGAATATTAGGAAAAAAGAATGAAATAAGCCATTTG
CAGCAACATGGATGGACTTAGAGATTATCATACTAAGTGAAGTTAGTGAAAGACAAACAT
CATATCACTTATGTGTGGAATCTTAAAAAAGAATACAAATGAACTTGTTTGTGAACAGAC
TGACTCATAGACTTTGAAAAACTTATGGTTACCAAAGGGGACAGATGGTTGTGGGGGGAA
GACGGAGGGTTTGGGCTTGTCATATCCACACTGTGTATATGGAATGATTGGCCAGTGGGG
ACCTGCTGTATAGCTCAAGGAGCTCTACCCAGTATTCTGTGATGGTCTATATGGGAAAAG
AATCTGAAAGAGAATGGATGTGTGTATATGTATAACTGAATCACTTTGACAGCAGAAATT
ATCACAATCTTATGAATCAACTATACATCAATACAACTTTAAAAAAATGGGAAAAAAGCA
ATACTAAATCATTTCAAGTTTGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57048153|ref|XP_536274.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57048153|ref|XP_536274.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               342-619, - strand, RNAz p=0.918559
               

               
               385-841, - strand, RNAz p=0.997814

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-619, - strand, RNAz p=0.918559
               

               
               385-841, - strand, RNAz p=0.997814

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               333-1161, gnl|bosTau2|chr12 (1890234-1889375)
               


               
               342-1159, gnl|bosTau2|chr10 (20372741-20371914)
               


               
               345-1127, gnl|bosTau2|chr10 (69935395-69934597)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               333-1161, gnl|bosTau2|chr12 (1890234-1889375)
               


               
               342-1159, gnl|bosTau2|chr10 (20372741-20371914)
               


               
               345-1127, gnl|bosTau2|chr10 (69935395-69934597)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               nco (0.161734)

	342-619, - strand, RNAz p=0.918559
	385-841, - strand, RNAz p=0.997814

	333-1161, gnl\|bosTau2\|chr12 (1890234-1889375)

	342-1159, gnl\|bosTau2\|chr10 (20372741-20371914)

	345-1127, gnl\|bosTau2\|chr10 (69935395-69934597)