Ss1.1-Pig4-TMW8049O09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTACTGTGCCATGGCAGGCAGTCTCTGCTTGGGCCTTCATGGCCACACAGACCTTCTATT CCACGGGCCACCAGCCTGTCTTTCCAGCCATCCATTGGCATGCAGCCTTCGTGGGAGTCT CAGAGGGTCCTGGCTTTACCTGGCTGTCTGCTTTGCTGGTGGGATCCAACACCTTTGCCT CCCATCTCCTCTTTGCAGTAGGTTGCCCATTGCTCCTGCTCTGGCCCTTTTTGTGTGAGA GTCAAGGGCCCCGGAAGAGGCGGCAGCCCCCAGGGAATGAAGCTGAGGCCACAGTCAGGC CTGAGGAGGAGGAGGAGCCATTGATGGAGATGCGGCTCCGGGATGCGCCTCACCACTTCA ATGCAGCGCTGCTGCAGCTGGGCCTCAAGTACCTCTTTGTCCTTGGTATTCAGATTCTGG CCAGTGCCTTGGCAGCCTCCATCCTCCGCAGGCATCTCATGGTCTGGAAGGTGTTTGCCC CCAAGTTCATTTTTGAGGCCATGGGCTTCATTGTGAGCAGCGTGGGACTTTGCCTGGGCA TAGCTTTGGTGATGCGAGTGGATGGTGCTGTGAGCTCTTGGTTCAGGCAGTTAGTTCTGT CCCACCAGAGAGCTGGAGAACAATCTAGCCTGGTCTATACGGGTGCTGGATCATCTGCAA GAGAGGCTCAGTCATACCTCTTACCGTCATGTAGCCAGGAGCTACTGGTATCTGGGACTT CATCATTTTGTAACTCAAAATCATAGTGGGGCCTAATCCCTGACTCCTGCTCTGGATATC TGAGGGACTGGGGGGCTGTCTCCTAAGCAGAATAAAATAACAATGTAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTACTGTGCCATGGCAGGCAGTCTCTGCTTGGGCCTTCATGGCCACACAGACCTTCTATT CCACGGGCCACCAGCCTGTCTTTCCAGCCATCCATTGGCATGCAGCCTTCGTGGGAGTCT CAGAGGGTCCTGGCTTTACCTGGCTGTCTGCTTTGCTGGTGGGATCCAACACCTTTGCCT CCCATCTCCTCTTTGCAGTAGGTTGCCCATTGCTCCTGCTCTGGCCCTTTTTGTGTGAGA GTCAAGGGCCCCGGAAGAGGCGGCAGCCCCCAGGGAATGAAGCTGAGGCCACAGTCAGGC CTGAGGAGGAGGAGGAGCCATTGATGGAGATGCGGCTCCGGGATGCGCCTCACCACTTCA ATGCAGCGCTGCTGCAGCTGGGCCTCAAGTACCTCTTTGTCCTTGGTATTCAGATTCTGG CCAGTGCCTTGGCAGCCTCCATCCTCCGCAGGCATCTCATGGTCTGGAAGGTGTTTGCCC CCAAGTTCATTTTTGAGGCCATGGGCTTCATTGTGAGCAGCGTGGGACTTTGCCTGGGCA TAGCTTTGGTGATGCGAGTGGATGGTGCTGTGAGCTCTTGGTTCAGGCAGTTAGTTCTGT CCCACCAGAGAGCTGGAGAACAATCTAGCCTGGTCTATACGGGTGCTGGATCATCTGCAA GAGAGGCTCAGTCATACCTCTTACCGTCATGTAGCCAGGAGCTACTGGTATCTGGGACTT CATCATTTTGTAACTCAAAATCATAGTGGGGCCTAATCCCTGACTCCTGCTCTGGATATC TGAGGGACTGGGGGGCTGTCTCCTAAGCAGAATAAAATAACAATGTAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 195-345, + strand, RNAz p=0.955483 | |
| 272-403, + strand, RNAz p=0.887088 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 195-345, + strand, RNAz p=0.955483 | |
| 272-403, + strand, RNAz p=0.887088 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 195-413, gnl|bosTau2|chr8 (27875352-27875134) | |
| 195-413, gnl|canFam2|chr11 (54694147-54694391) | |
| 195-413, gnl|danRer3|chrNA (166124341-166124547) | |
| 195-413, gnl|dasNov1|scaffold_77065 (5162-4904) | |
| 195-413, gnl|echTel1|scaffold_225747 (4028-4282) | |
| 195-413, gnl|fr1|chrUn (226670464-226670668) | |
| 195-413, gnl|galGal2|chrZ_random (7978873-7979100) | |
| 195-413, gnl|hg17|chr9 (35080050-35080301) | |
| 195-413, gnl|Hg17|chr9 (35080281-35080063) | |
| 195-413, gnl|loxAfr1|scaffold_32330 (14207-14470) | |
| 195-413, gnl|mm7|chr4 (43033013-43033272) | |
| 195-413, gnl|Mm7|chr4 (43033253-43033026) | |
| 195-413, gnl|monDom2|scaffold_17 (46832555-46832302) | |
| 195-413, gnl|panTro1|chr11 (35635759-35636010) | |
| 195-413, gnl|rheMac2|chr15 (42463783-42463532) | |
| 195-413, gnl|rn3|chr5 (59509259-59509513) | |
| 195-413, gnl|tetNig1|chrUn_random (53521972-53521766) | |
| 195-413, gnl|xenTro1|scaffold_1133 (194968-195186) | |
| 482-829, gnl|bosTau2|chr8 (27874308-27873959) | |
| 482-829, gnl|Hg17|chr9 (35079221-35078687) | |
| 482-829, gnl|Mm7|chr4 (43031855-43031456) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-413, gnl|bosTau2|chr8 (27875352-27875134) | |
| 195-413, gnl|canFam2|chr11 (54694147-54694391) | |
| 195-413, gnl|danRer3|chrNA (166124341-166124547) | |
| 195-413, gnl|dasNov1|scaffold_77065 (5162-4904) | |
| 195-413, gnl|echTel1|scaffold_225747 (4028-4282) | |
| 195-413, gnl|fr1|chrUn (226670464-226670668) | |
| 195-413, gnl|galGal2|chrZ_random (7978873-7979100) | |
| 195-413, gnl|hg17|chr9 (35080050-35080301) | |
| 195-413, gnl|Hg17|chr9 (35080281-35080063) | |
| 195-413, gnl|loxAfr1|scaffold_32330 (14207-14470) | |
| 195-413, gnl|mm7|chr4 (43033013-43033272) | |
| 195-413, gnl|Mm7|chr4 (43033253-43033026) | |
| 195-413, gnl|monDom2|scaffold_17 (46832555-46832302) | |
| 195-413, gnl|panTro1|chr11 (35635759-35636010) | |
| 195-413, gnl|rheMac2|chr15 (42463783-42463532) | |
| 195-413, gnl|rn3|chr5 (59509259-59509513) | |
| 195-413, gnl|tetNig1|chrUn_random (53521972-53521766) | |
| 195-413, gnl|xenTro1|scaffold_1133 (194968-195186) | |
| 482-829, gnl|bosTau2|chr8 (27874308-27873959) | |
| 482-829, gnl|Hg17|chr9 (35079221-35078687) | |
| 482-829, gnl|Mm7|chr4 (43031855-43031456) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cst (0.280073) | |
| med (0.232504) | |
| eje (0.197668) | |
| nep (0.183925) | |
| eye (0.170503) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.280073) | |
| med (0.232504) | |
| eje (0.197668) | |
| nep (0.183925) | |
| eye (0.170503) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eru (0.120048) | |
| jca (0.11396) |