Ss1.1-Pig4-TMW8049O12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGGAAGGAAGCATGCGATTGGGTGGAGCACGAGGTCTTAATTTGAGAAAATCAGCGCA ATTTCCGATTTGGTTGCAAGATGGCTGCGGCCAGTGGTGGATTCCAACCTCGTGAGCGGC GCGCCGGGGAGCAGGAAGAAGACTGGGATGCTGTGGCGCCCAAGCGGCCCCGACTCGGGG CGGGAAGCAAGACCGGAGGCCGCAGACTCATTGTGGTGCTGGAAGGGGCCAGCCTGGAGA CAGTCAAGGTAGGGAAGACGTATGAGCTGCTTAACTGTGACAAGCACAAGTCCATGTTGT TGAAGAATGGACGGGACCCTGGCGAAGTGAGACCGGACATAGCTCACCAGAGTTTACTGA TGCTGATGGACAGTCCCCTGAACCGGGCTGGCTTGCTACAGGTTTATATCCACACACAGA AGAACGTGCTGATTGAAGTGAACCCCCAGACTCGAATTCCCAGAACCTTTGACCGTTTCT GTGGCCTCATGGTTCAGCTTTTACACAAACTCAGTGTTCGAGCAGCTGATGGCCCCCAGA AGCTCTTGAAGGTGATTAAGAATCCAGTATCAGATCACTTCCCAGTTGGATGTATGAAAA TTGGCACTTCTTTCTCCATCCCAGTTGTCAGTGATGTGCGAGAGCTGGTGCCCAGCAGTG ACCCTGTTGTCTTCGTGGTGGGGGCCTTTGCCCATGGCCAGGTGGACGTGGAGTACACAG AGAAGATGGTGTCCATCAGCAACTACCCCCTCTCTGCTGCCCTCACCTGTGCGAAACTCA CCACCGCCTTCGAGGAAGTGTGGAGGGTCATCTGACGATAGAACCTCGTCCCACACAGAG ACTGTGGACATTGCTCCCCGACCCTGTGCTCAGCAGACTGCTGCCAACCTTCCTGCACCG AGACGAGGCTGTACATCTGCTGCGTGTTTATTTTATAAATTACTGTTCTTGCAAAAAAAA TTGTTTTTTGGGGACTCCTTGAACTCAGCAGGGTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGGAAGGAAGCATGCGATTGGGTGGAGCACGAGGTCTTAATTTGAGAAAATCAGCGCA ATTTCCGATTTGGTTGCAAGATGGCTGCGGCCAGTGGTGGATTCCAACCTCGTGAGCGGC GCGCCGGGGAGCAGGAAGAAGACTGGGATGCTGTGGCGCCCAAGCGGCCCCGACTCGGGG CGGGAAGCAAGACCGGAGGCCGCAGACTCATTGTGGTGCTGGAAGGGGCCAGCCTGGAGA CAGTCAAGGTAGGGAAGACGTATGAGCTGCTTAACTGTGACAAGCACAAGTCCATGTTGT TGAAGAATGGACGGGACCCTGGCGAAGTGAGACCGGACATAGCTCACCAGAGTTTACTGA TGCTGATGGACAGTCCCCTGAACCGGGCTGGCTTGCTACAGGTTTATATCCACACACAGA AGAACGTGCTGATTGAAGTGAACCCCCAGACTCGAATTCCCAGAACCTTTGACCGTTTCT GTGGCCTCATGGTTCAGCTTTTACACAAACTCAGTGTTCGAGCAGCTGATGGCCCCCAGA AGCTCTTGAAGGTGATTAAGAATCCAGTATCAGATCACTTCCCAGTTGGATGTATGAAAA TTGGCACTTCTTTCTCCATCCCAGTTGTCAGTGATGTGCGAGAGCTGGTGCCCAGCAGTG ACCCTGTTGTCTTCGTGGTGGGGGCCTTTGCCCATGGCCAGGTGGACGTGGAGTACACAG AGAAGATGGTGTCCATCAGCAACTACCCCCTCTCTGCTGCCCTCACCTGTGCGAAACTCA CCACCGCCTTCGAGGAAGTGTGGAGGGTCATCTGACGATAGAACCTCGTCCCACACAGAG ACTGTGGACATTGCTCCCCGACCCTGTGCTCAGCAGACTGCTGCCAACCTTCCTGCACCG AGACGAGGCTGTACATCTGCTGCGTGTTTATTTTATAAATTACTGTTCTTGCAAAAAAAA TTGTTTTTTGGGGACTCCTTGAACTCAGCAGGGTCG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-251, gnl|bosTau2|chr5 (60303973-60303726) | |
| 1-251, gnl|Hg17|chr12 (6950270-6950517) | |
| 1-251, gnl|Mm7|chr6 (124737126-124736876) | |
| 348-497, gnl|bosTau2|chr5 (60299677-60299528) | |
| 348-497, gnl|canFam2|chr27 (41098941-41098774) | |
| 348-497, gnl|danRer3|chrNA (75369041-75369207) | |
| 348-497, gnl|dasNov1|scaffold_28693 (6568-6739) | |
| 348-497, gnl|echTel1|scaffold_273471 (9495-9325) | |
| 348-497, gnl|fr1|chrUn (74814332-74814166) | |
| 348-497, gnl|galGal2|chr1 (71443053-71443218) | |
| 348-497, gnl|hg17|chr12 (6953955-6954122) | |
| 348-497, gnl|Hg17|chr12 (6953972-6954121) | |
| 348-497, gnl|loxAfr1|scaffold_4871 (19280-19446) | |
| 348-497, gnl|mm7|chr6 (124730571-124730404) | |
| 348-497, gnl|Mm7|chr6 (124730552-124730403) | |
| 348-497, gnl|monDom2|scaffold_31 (15509371-15509537) | |
| 348-497, gnl|oryCun1|scaffold_215058 (118505-118671) | |
| 348-497, gnl|panTro1|chr10 (7494304-7494471) | |
| 348-497, gnl|rheMac2|chr11 (7158823-7158990) | |
| 348-497, gnl|rn3|chr4 (161074031-161073864) | |
| 348-497, gnl|tetNig1|chr8 (8882179-8882013) | |
| 348-497, gnl|xenTro1|scaffold_811 (323532-323369) | |
| 699-991, gnl|bosTau2|chr5 (60298602-60298299) | |
| 699-991, gnl|canFam2|chr27 (41097466-41097740) | |
| 699-991, gnl|dasNov1|scaffold_28693 (8495-8214) | |
| 699-991, gnl|echTel1|scaffold_265906 (5839-6088) | |
| 699-991, gnl|Hg17|chr12 (6955116-6955432) | |
| 699-991, gnl|hg17|chr7 (127902835-127903114) | |
| 699-991, gnl|loxAfr1|scaffold_104349 (1042-1321) | |
| 699-991, gnl|mm7|chr6 (124729295-124729550) | |
| 699-991, gnl|Mm7|chr6 (124729554-124729228) | |
| 699-991, gnl|oryCun1|scaffold_215058 (120844-120568) | |
| 699-991, gnl|panTro1|chr6 (130292438-130292717) | |
| 699-991, gnl|rheMac2|chr11 (7160273-7159993) | |
| 699-991, gnl|rn3|chr4 (161072702-161072955) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-251, gnl|bosTau2|chr5 (60303973-60303726) | |
| 1-251, gnl|Hg17|chr12 (6950270-6950517) | |
| 1-251, gnl|Mm7|chr6 (124737126-124736876) | |
| 348-497, gnl|bosTau2|chr5 (60299677-60299528) | |
| 348-497, gnl|canFam2|chr27 (41098941-41098774) | |
| 348-497, gnl|danRer3|chrNA (75369041-75369207) | |
| 348-497, gnl|dasNov1|scaffold_28693 (6568-6739) | |
| 348-497, gnl|echTel1|scaffold_273471 (9495-9325) | |
| 348-497, gnl|fr1|chrUn (74814332-74814166) | |
| 348-497, gnl|galGal2|chr1 (71443053-71443218) | |
| 348-497, gnl|hg17|chr12 (6953955-6954122) | |
| 348-497, gnl|Hg17|chr12 (6953972-6954121) | |
| 348-497, gnl|loxAfr1|scaffold_4871 (19280-19446) | |
| 348-497, gnl|mm7|chr6 (124730571-124730404) | |
| 348-497, gnl|Mm7|chr6 (124730552-124730403) | |
| 348-497, gnl|monDom2|scaffold_31 (15509371-15509537) | |
| 348-497, gnl|oryCun1|scaffold_215058 (118505-118671) | |
| 348-497, gnl|panTro1|chr10 (7494304-7494471) | |
| 348-497, gnl|rheMac2|chr11 (7158823-7158990) | |
| 348-497, gnl|rn3|chr4 (161074031-161073864) | |
| 348-497, gnl|tetNig1|chr8 (8882179-8882013) | |
| 348-497, gnl|xenTro1|scaffold_811 (323532-323369) | |
| 699-991, gnl|bosTau2|chr5 (60298602-60298299) | |
| 699-991, gnl|canFam2|chr27 (41097466-41097740) | |
| 699-991, gnl|dasNov1|scaffold_28693 (8495-8214) | |
| 699-991, gnl|echTel1|scaffold_265906 (5839-6088) | |
| 699-991, gnl|Hg17|chr12 (6955116-6955432) | |
| 699-991, gnl|hg17|chr7 (127902835-127903114) | |
| 699-991, gnl|loxAfr1|scaffold_104349 (1042-1321) | |
| 699-991, gnl|mm7|chr6 (124729295-124729550) | |
| 699-991, gnl|Mm7|chr6 (124729554-124729228) | |
| 699-991, gnl|oryCun1|scaffold_215058 (120844-120568) | |
| 699-991, gnl|panTro1|chr6 (130292438-130292717) | |
| 699-991, gnl|rheMac2|chr11 (7160273-7159993) | |
| 699-991, gnl|rn3|chr4 (161072702-161072955) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| ill (0.702371) | |
| ste (0.405625) | |
| med (0.348756) | |
| cje (0.330469) | |
| sme (0.305437) | |
| ldo (0.291008) | |
| che (0.272628) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.702371) | |
| ste (0.405625) | |
| med (0.348756) | |
| cje (0.330469) | |
| sme (0.305437) | |
| ldo (0.291008) | |
| che (0.272628) | |
| ece (0.229305) | |
| nms (0.213858) | |
| mas (0.210305) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| jej (0.0989218) | |
| eje (0.0988338) |