Non-Coding RNA Search

Ss1.1-Pig4-TMW8049P07.5

Sequence:


               
               TTTTTTTTTTTTTTTTACTTTTTTTTATTTAAATAAGGAGAATTCTTTCATATGGAAAGA
GCTAGTACAATCACATATTTGAAAGGAGAAACAACAGGTACTGAACTGGAGGGAGGGTGA
AGGGTAAGTGTGCCATCACGGCCTGGTGAACCCACGGTTCCATTTCCCATCCAAGGTAAA
AAGCTCCCCCAAACAATGTCCAAACAAGCTGCACGTTACACCTTTAGCCATCGTCTGCCC
TTTCAAATATCTGGTCTACATGAAAAGACAAAGAGAGGAAAGGCCAAAATAAGAAAGGAA
ACAAAAACAAAAACCCTCTCAAGAACAACAAAAAAAACCCCCAAACCGTTTTTACTACGC
AAGGCCTGAGGTCAAAAGCTTGGAGTACAGTTTCGCCTCTAAACAATGGAAGAAAGTCAT
CCAGAGAGCCTTGACAGACAGTTCCGCTCCGAGGCTTCGCAACAGGCTGAAGACAGGGCC
CTGGGGACACTGCTCCCATCTTGGAGGCCACCTAACTGGGGTGGAGAAACGGTGAACGGC
AGGTTGGACGCGCCTGGACGATCGCTAGCCAGGTGTGCGCTGGTGGTCCCGGTGGAGAGC
AGGGCTAGGGGACAGCCGGTGTCTGACCCCAACACTGAGCCATTCCTGTCCGGGTGATCT
GTTTGTCTTAGGTCCATGTCATTTTTCAAACAGGAAGAGCCAGCTTTCTGGAAGTCTGCG
TTACCCAGTCATCACAAGACATGACAAAGCACAAGCACTCTAGTGTCCTTGGTTGTCAAA
GGCCATTTCTAACAGACCTTCTAACCCAGGCTTGCTCTGCAAGAAGGGACAAGGGACAAA
TACAGATTTGAGAGGTGACATGCGGCTACTTGGCAGAGGGAATCACACAGCAGGGAGGGG
CTCGACCAGCTCACACGCACTGCCTCTGCGGGCCAGTTTGGAGCGTGGCCGTGCCCTCGT
GTGCGTGCTCTCAGCCTCCTCAGCTCTTGAGCACCAGTCACAAACCTCATCAACTATCCG
GAAGGCAGATCCAGAAGACAGGAGGGCGAGGGGAGAGCTGGAGAAGAGTGAGGCCACTAT
TTAGTGACAAGACATAGCCATATCCCCCTGGAAGTGGCTGGAATGACCATGGCTTTGGAA
GTGGACCAACCAGTTTTTCTGTGCATTAGTCATCCTTCAGTTTTCCCCCTTAAGGAGCCT
AGAGCCGGAAGTGTATGAATTTCACGTCTGAAAACAGTTACGTCAGTTAAAAGGGGGAAG
CAAAGAAAACCGGACCAAACACAGCTGGCAACGAGGCCTCCAGTGGGTGGACGCGGCCCC
GTGGATACAGGAACCCACGCTCTGGGACCTTACCCCACTGAGTAATGGACACTGAACACA
CACCACTGCAGGGTCACCGGTTGCCAAGCAACAGGCCGCACCATCCAGGACCAGGGCCAA
GCAGCCTGTATCAGAAGGGAGAGTAAGTTTAGGCAGAGGTACAGTGAGAAGGCGGACACG
ACCCTCCCTCCATCTCAGCAGCAGAAAAGGTTAAGTGCTCGTCTGTACCTCTTCCTGCCA
AAGGCCCAAGGCATTCTGGCAGGCGCCTCTGCATGGATCTGCACTCTGAGGATGGGAATT
TGAAGCCCAAACACGAGCCCAAGCCCTATTACCTTGAGCTTGGCTCCAAAACCACATGAA
AGGAAGAGATATTGCACCTTAAAACATCTCTGCACTAAAAACTGCATTTAATCAGACCAA
GGAAGAGATGGGGTGTTGGGCAGGCCCCAGGCCTGCCCTCTGCCTCCAGAATTCAATTTA
AAATCTGTATCTCAGTGGGAAAGAGACCGCAGCTTGGGCACACGAAGGTGGTAAACGCAC
TCAACTTCACATGCAGTTTCCTGGCCTCTCCTGCACAGAACAATTCAGACATTATATATA
AATAGCGCAGTGAAACATTTACTTCTTTTTTTCACCTAGACCTACAACATCAATACATAT
AAATAAATTCTAGTGTTTTCTGTTCTTATTGGGGGAGGGGGGAGATACAGGGGTAGAGAA
ATGGACTGGAGAAAGGTGAGCCTTTTGTTTTTCCTTTTTTTCGAACAGGACGTACTGTCA
CTGACGGCAGGTTCACCTGAAGGGACACAGCTTGAGAGTCTGTAACAGCATCCAGGATGC
AGAGAGCCTTTTTTCCTTTTGACACTGTGCACTGGAATCGGGTGTGAGGGACCTGGACGT
GTCTCTAAATGTGAGTGTGTGGCTCCTAGGGGGCGGCCGGGGCAGAGGGGAGCTGCACTC
AGGCAGGGGAAGGGCGACTGGGGCACATGGGGAGCTCTGGCCAGCGGGCGGCCCTGTGAG
AAGGGACGTCGGGGTACAGATTCAGGGGCTCAAAGAGGAAAAGAAAAGAAAAGCGAGTGA
GAAGTAAGGTCTGAGTGGAGGCAAGGAGGGGAGTGCTGCAAGCTGTCGACGAAGCAGGAA
AGCATCTTCCAAGCAAACTGGCCCTGCCCAAGGGAGGCCCGGAGACCCCACTTCCTTACG
GTGGCGAAGAGCCGCAGGAGGGGACTCCAGCCGTTCCTAAGGCGCTTCTTCTCCTGTGTC
CTACACTAGACACAGAGCTTAGGACCACAGCCCGAGTGGCTGTCACATCCCTGCAGGGCG
ACCCCGGGTGCCTGCTGCGCGTCCTTTGGGCCAGGCTGTCCGGGGCCCACCAGCCGCGGC
AGGTAGGTGGTTAGTGCCTCTGAAGAGCGTGTGCCCAACCCAATGTTTCCCTCCCTTCCT
CGGGACGACAGACTCTGGCATTTCCTTCTAGTTCTTATCTCAAAACCCGAAACCCAGCAC
AGAAGGCCTTGCATGAACACACTGGGGGAGGCAGCTCTGCAGACTTTAGAAGCTGCCCAG
GCTGTTTGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTACTTTTTTTTATTTAAATAAGGAGAATTCTTTCATATGGAAAGA
GCTAGTACAATCACATATTTGAAAGGAGAAACAACAGGTACTGAACTGGAGGGAGGGTGA
AGGGTAAGTGTGCCATCACGGCCTGGTGAACCCACGGTTCCATTTCCCATCCAAGGTAAA
AAGCTCCCCCAAACAATGTCCAAACAAGCTGCACGTTACACCTTTAGCCATCGTCTGCCC
TTTCAAATATCTGGTCTACATGAAAAGACAAAGAGAGGAAAGGCCAAAATAAGAAAGGAA
ACAAAAACAAAAACCCTCTCAAGAACAACAAAAAAAACCCCCAAACCGTTTTTACTACGC
AAGGCCTGAGGTCAAAAGCTTGGAGTACAGTTTCGCCTCTAAACAATGGAAGAAAGTCAT
CCAGAGAGCCTTGACAGACAGTTCCGCTCCGAGGCTTCGCAACAGGCTGAAGACAGGGCC
CTGGGGACACTGCTCCCATCTTGGAGGCCACCTAACTGGGGTGGAGAAACGGTGAACGGC
AGGTTGGACGCGCCTGGACGATCGCTAGCCAGGTGTGCGCTGGTGGTCCCGGTGGAGAGC
AGGGCTAGGGGACAGCCGGTGTCTGACCCCAACACTGAGCCATTCCTGTCCGGGTGATCT
GTTTGTCTTAGGTCCATGTCATTTTTCAAACAGGAAGAGCCAGCTTTCTGGAAGTCTGCG
TTACCCAGTCATCACAAGACATGACAAAGCACAAGCACTCTAGTGTCCTTGGTTGTCAAA
GGCCATTTCTAACAGACCTTCTAACCCAGGCTTGCTCTGCAAGAAGGGACAAGGGACAAA
TACAGATTTGAGAGGTGACATGCGGCTACTTGGCAGAGGGAATCACACAGCAGGGAGGGG
CTCGACCAGCTCACACGCACTGCCTCTGCGGGCCAGTTTGGAGCGTGGCCGTGCCCTCGT
GTGCGTGCTCTCAGCCTCCTCAGCTCTTGAGCACCAGTCACAAACCTCATCAACTATCCG
GAAGGCAGATCCAGAAGACAGGAGGGCGAGGGGAGAGCTGGAGAAGAGTGAGGCCACTAT
TTAGTGACAAGACATAGCCATATCCCCCTGGAAGTGGCTGGAATGACCATGGCTTTGGAA
GTGGACCAACCAGTTTTTCTGTGCATTAGTCATCCTTCAGTTTTCCCCCTTAAGGAGCCT
AGAGCCGGAAGTGTATGAATTTCACGTCTGAAAACAGTTACGTCAGTTAAAAGGGGGAAG
CAAAGAAAACCGGACCAAACACAGCTGGCAACGAGGCCTCCAGTGGGTGGACGCGGCCCC
GTGGATACAGGAACCCACGCTCTGGGACCTTACCCCACTGAGTAATGGACACTGAACACA
CACCACTGCAGGGTCACCGGTTGCCAAGCAACAGGCCGCACCATCCAGGACCAGGGCCAA
GCAGCCTGTATCAGAAGGGAGAGTAAGTTTAGGCAGAGGTACAGTGAGAAGGCGGACACG
ACCCTCCCTCCATCTCAGCAGCAGAAAAGGTTAAGTGCTCGTCTGTACCTCTTCCTGCCA
AAGGCCCAAGGCATTCTGGCAGGCGCCTCTGCATGGATCTGCACTCTGAGGATGGGAATT
TGAAGCCCAAACACGAGCCCAAGCCCTATTACCTTGAGCTTGGCTCCAAAACCACATGAA
AGGAAGAGATATTGCACCTTAAAACATCTCTGCACTAAAAACTGCATTTAATCAGACCAA
GGAAGAGATGGGGTGTTGGGCAGGCCCCAGGCCTGCCCTCTGCCTCCAGAATTCAATTTA
AAATCTGTATCTCAGTGGGAAAGAGACCGCAGCTTGGGCACACGAAGGTGGTAAACGCAC
TCAACTTCACATGCAGTTTCCTGGCCTCTCCTGCACAGAACAATTCAGACATTATATATA
AATAGCGCAGTGAAACATTTACTTCTTTTTTTCACCTAGACCTACAACATCAATACATAT
AAATAAATTCTAGTGTTTTCTGTTCTTATTGGGGGAGGGGGGAGATACAGGGGTAGAGAA
ATGGACTGGAGAAAGGTGAGCCTTTTGTTTTTCCTTTTTTTCGAACAGGACGTACTGTCA
CTGACGGCAGGTTCACCTGAAGGGACACAGCTTGAGAGTCTGTAACAGCATCCAGGATGC
AGAGAGCCTTTTTTCCTTTTGACACTGTGCACTGGAATCGGGTGTGAGGGACCTGGACGT
GTCTCTAAATGTGAGTGTGTGGCTCCTAGGGGGCGGCCGGGGCAGAGGGGAGCTGCACTC
AGGCAGGGGAAGGGCGACTGGGGCACATGGGGAGCTCTGGCCAGCGGGCGGCCCTGTGAG
AAGGGACGTCGGGGTACAGATTCAGGGGCTCAAAGAGGAAAAGAAAAGAAAAGCGAGTGA
GAAGTAAGGTCTGAGTGGAGGCAAGGAGGGGAGTGCTGCAAGCTGTCGACGAAGCAGGAA
AGCATCTTCCAAGCAAACTGGCCCTGCCCAAGGGAGGCCCGGAGACCCCACTTCCTTACG
GTGGCGAAGAGCCGCAGGAGGGGACTCCAGCCGTTCCTAAGGCGCTTCTTCTCCTGTGTC
CTACACTAGACACAGAGCTTAGGACCACAGCCCGAGTGGCTGTCACATCCCTGCAGGGCG
ACCCCGGGTGCCTGCTGCGCGTCCTTTGGGCCAGGCTGTCCGGGGCCCACCAGCCGCGGC
AGGTAGGTGGTTAGTGCCTCTGAAGAGCGTGTGCCCAACCCAATGTTTCCCTCCCTTCCT
CGGGACGACAGACTCTGGCATTTCCTTCTAGTTCTTATCTCAAAACCCGAAACCCAGCAC
AGAAGGCCTTGCATGAACACACTGGGGGAGGCAGCTCTGCAGACTTTAGAAGCTGCCCAG
GCTGTTTGGGAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               258-1570, gnl|bosTau2|chr11 (82074343-82073058)
               


               
               1770-2156, gnl|bosTau2|chr11 (82072982-82072596)
               

               
               1770-2156, gnl|Hg17|chr9 (131403397-131403012)
               

               
               1770-2156, gnl|Mm7|chr2 (32240310-32239932)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               258-1570, gnl|bosTau2|chr11 (82074343-82073058)
               


               
               1770-2156, gnl|bosTau2|chr11 (82072982-82072596)
               

               
               1770-2156, gnl|Hg17|chr9 (131403397-131403012)
               

               
               1770-2156, gnl|Mm7|chr2 (32240310-32239932)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	258-1570, gnl\|bosTau2\|chr11 (82074343-82073058)

	1770-2156, gnl\|bosTau2\|chr11 (82072982-82072596)
	1770-2156, gnl\|Hg17\|chr9 (131403397-131403012)
	1770-2156, gnl\|Mm7\|chr2 (32240310-32239932)

	elu (0.385356)
	hyp (0.285673)
	fce (0.271592)
	cty (0.20816)
	eje (0.197668)
	nep (0.183925)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	cag (0.151194)
	spl (0.143184)
	lnt (0.142308)
	nca (0.136874)
	che (0.136314)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)