Non-Coding RNA Search

Ss1.1-Pig4-TMW8049P10.5

Sequence:


               
               GTTTCAGCAGCAGCAGATGTGCATTCCCATCGGCGAGCCGCCCCAGTCGCCTCGGGGAAG
CGCTGGCTCCACGCCCGGGGTGGGAGCACGAGCATCCTCCAGTTCGGGAGCCTCGGCCAA
GTCGACCTCCACACCTTTTCCCTTCCGAACCGGCCTGACGTCTGGAAACCGGACCGAAGA
CGTGCAGGCTCACCCGGCCCAGAGGACGCAGCCAGCGGCCGGGGGCCCTGTTACCCGCCT
CCAGGAGTGTCCCATGGGGCCACAGAACCAGTCTCTTCTTGAGAATGAGCTTAAGGCTGC
AGTCTCTTCTTTCTCCCCGAAGAGAGCGGGTGACAGCGCCCCCGTAGCTAACTTGGAGCT
GCCGCCTTTCCTCCAGAACCTGTGTCGTCAAGTGAGCCATCTCCGCCTGGGACCTCACAG
CAAGTGGCAGGAGAGCATCACCCGGCCCGGCGAAGGCCCTGCTGGGCTTCCAGAGGACGC
ACAATCCATTTGTTCCTCCTTGGAAAAGATGCTTTCTAAAAACATGGAACTGATGGAGAA
GAAACTCACGGACTACATCGATCAGCGAATTTATAAACTCCAGGAGCACCTAGATAATAA
GATTGCTTTGTTGGTGGACTTGCTGCAAAATCCCAACTCCCCACCCTCTGGGATGCCTCT
AAGACATTATGACTCTGGAGAAAGACTTTCAAATGGAGAAAGATAAGCACTCAGCACATA
CAGAGTACTACAGATATTTATTAAGTATTTATTACAAAGCCAACCCCCCCCAAAAAGTTT
ATGAAAAGCAGGTATTTAATGTCCTTTGAAATATCTCCACTTATATAAATTGACTTCAGT
GTTTTTTTTTTTACTGTACTTGTATATCCAGTACTGTACACTAAGAGTTAACATGATTGA
GGCTAAGTTATTTTTGTTTGCAGTATTTATCACTCTTAACAGAAGTTTATGTACACTGCC
AGGTTAAGTGTTTACGATTTTAAGGATTTCTAATGGAGTTCCTTAGTTTGTATTGTATAT
GTGTTTTGTAGAAGTATATTTTTTATTTATACAAAGATGTTATTTTGTAGTCTTAGGAGT
GTGAAAAATAATGCTCTGAGTATTTGATAATTTTCCTTTTTCTAATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCAGCAGCAGCAGATGTGCATTCCCATCGGCGAGCCGCCCCAGTCGCCTCGGGGAAG
CGCTGGCTCCACGCCCGGGGTGGGAGCACGAGCATCCTCCAGTTCGGGAGCCTCGGCCAA
GTCGACCTCCACACCTTTTCCCTTCCGAACCGGCCTGACGTCTGGAAACCGGACCGAAGA
CGTGCAGGCTCACCCGGCCCAGAGGACGCAGCCAGCGGCCGGGGGCCCTGTTACCCGCCT
CCAGGAGTGTCCCATGGGGCCACAGAACCAGTCTCTTCTTGAGAATGAGCTTAAGGCTGC
AGTCTCTTCTTTCTCCCCGAAGAGAGCGGGTGACAGCGCCCCCGTAGCTAACTTGGAGCT
GCCGCCTTTCCTCCAGAACCTGTGTCGTCAAGTGAGCCATCTCCGCCTGGGACCTCACAG
CAAGTGGCAGGAGAGCATCACCCGGCCCGGCGAAGGCCCTGCTGGGCTTCCAGAGGACGC
ACAATCCATTTGTTCCTCCTTGGAAAAGATGCTTTCTAAAAACATGGAACTGATGGAGAA
GAAACTCACGGACTACATCGATCAGCGAATTTATAAACTCCAGGAGCACCTAGATAATAA
GATTGCTTTGTTGGTGGACTTGCTGCAAAATCCCAACTCCCCACCCTCTGGGATGCCTCT
AAGACATTATGACTCTGGAGAAAGACTTTCAAATGGAGAAAGATAAGCACTCAGCACATA
CAGAGTACTACAGATATTTATTAAGTATTTATTACAAAGCCAACCCCCCCCAAAAAGTTT
ATGAAAAGCAGGTATTTAATGTCCTTTGAAATATCTCCACTTATATAAATTGACTTCAGT
GTTTTTTTTTTTACTGTACTTGTATATCCAGTACTGTACACTAAGAGTTAACATGATTGA
GGCTAAGTTATTTTTGTTTGCAGTATTTATCACTCTTAACAGAAGTTTATGTACACTGCC
AGGTTAAGTGTTTACGATTTTAAGGATTTCTAATGGAGTTCCTTAGTTTGTATTGTATAT
GTGTTTTGTAGAAGTATATTTTTTATTTATACAAAGATGTTATTTTGTAGTCTTAGGAGT
GTGAAAAATAATGCTCTGAGTATTTGATAATTTTCCTTTTTCTAATTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61832265|ref|XP_587684.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832265|ref|XP_587684.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-457, gnl|bosTau2|chr26 (28053289-28052847)
               

               
               15-457, gnl|Hg17|chr10 (124687667-124687225)
               

               
               15-457, gnl|Mm7|chr7 (127705217-127704778)
               


               
               468-1117, gnl|bosTau2|chr26 (28031975-28032623)
               

               
               468-1117, gnl|Hg17|chr10 (124647293-124647928)
               

               
               468-1117, gnl|Mm7|chr7 (127697923-127697278)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-457, gnl|bosTau2|chr26 (28053289-28052847)
               

               
               15-457, gnl|Hg17|chr10 (124687667-124687225)
               

               
               15-457, gnl|Mm7|chr7 (127705217-127704778)
               


               
               468-1117, gnl|bosTau2|chr26 (28031975-28032623)
               

               
               468-1117, gnl|Hg17|chr10 (124647293-124647928)
               

               
               468-1117, gnl|Mm7|chr7 (127697923-127697278)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               vin (0.665115)
               

               
               pro (0.512033)
               

               
               fat (0.294855)
               

               
               ova (0.258264)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               pro (0.512033)
               

               
               fat (0.294855)
               

               
               ova (0.258264)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               kid (0.129735)

	15-457, gnl\|bosTau2\|chr26 (28053289-28052847)
	15-457, gnl\|Hg17\|chr10 (124687667-124687225)
	15-457, gnl\|Mm7\|chr7 (127705217-127704778)

	468-1117, gnl\|bosTau2\|chr26 (28031975-28032623)
	468-1117, gnl\|Hg17\|chr10 (124647293-124647928)
	468-1117, gnl\|Mm7\|chr7 (127697923-127697278)

	vin (0.665115)
	pro (0.512033)
	fat (0.294855)
	ova (0.258264)
	ste (0.135208)
	pla (0.133672)
	kid (0.129735)