Ss1.1-Pig4-TMW8049P15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCGGGGTAGGAGCCCTCGGCCCAGTTCGAGTTCAGACAGCGACAGTGATAAATCCAC AGAAGACCCCCCAATGGACTTACCAGCCAATGGCTTCAGCGGTGGAAACCAGCCAGTAAA GAAGAGTTTCTTGGTATACCGTAATGACTGCAGCCTTCCCCGGAGCAGCTCAGACTCTGA GTCCAGCAGCAGTAGTAGCAGCAGCGCTGCCTCAGACCGGACCAGCACAACGCCTTCAAA ACAAGGCCGGGGCAAGCCCTCCTTCTCTCGGGGCACGTTCCCAGAAGATAGCAGTGAAGA TACCTCAGGCACTGAGAATGAGGCCTACTCCGTGGGCACTGGCCGCGGCGTGGGCCACAG CATGGTAAGGAAGAGTCTGGGCAGGGGAGCTGGCTGGCTGTCGGAGGATGAGGACTCCCC GCTGGATGCTCTGGACCTGGTGTGGGCCAAATGCCGAGGGTATCCATCGTACCCAGCTCT GATCATTGATCCAAAGATGCCCCGGGAAGGTATGTTCCACCATGGGGTTCCCATCCCTGT GCCCCCACTGGAGGTGCTGAAACTTGGGGAACAGATGACCCAGGAAGCCCGAGAGCATCT CTACCTCGTCCTCTTCTTTGACAACAAGCGAACCTGGCAGTGGCTGCCCAGAACTAAGCT GGTTCCTCTGGGCGTGAACCAGGACCTTGACAAGGAGAAGATGCTGGAGGGCCGCAAATC CAACATCCGCAAGTCAGTACAGATTGCCTACCACAGGGCTCTGCAGCACCGCAGCAAGGT GCAAGGCGAACAGAGCAGCGAAACCAGCGATAGTGACTAATACTGCCCAGAACAACCCAG CCTACAGTGCCCTGCCACCTCTCTCCTCCCCTTTGCTCACTGTCCTGGAGTGGCATCGGC CTCTGCACTGACTCATTCCTGGTCTTGGGGCCAGTCTCAGGGGAAGCTGGGTGGGGGAGG TCCCTCCCGCCCTGAGTGCAGCTGGACTGTACAGAACACTCCAAGGGCCCATGGTGGCTC TGCGCAATGAGAGGAGAGGTCCTACAGGCCAGAAAGCTCCAGAGACCTCACGGCATTGCA GTGCAAGGTGGTGGGCCAAGGTTAGGACACTGTGTAAACAGGCCATCCCACCACCTGCCT GCTTGTGCCAGGAGAATCCTAACTGCCTAGTGGCCTGAGGCCCCTGAGGTGGTGAGGTGA GCGGGCATCTGCCCAGCCTAGCAGTGGGATTGATGTCTGTCCAGCCCGGAAGAGGGGCAC TAGGTGACCCCCTCCCCTGCTGTTGTAAATACTGTAATTAGCGGAGAATTTAAATTATTC TCATTTGTAACTGCGTTTCCGGGTCGCGCCAGAGTCATTTGGTACTAAAAATCCTGGGGC CTGTCCCCACTTCCCTTCTTCCCATAGATTTCCCTCTCCTTTCAAACTGGTTTGTATTTA TTTCAAAGGAAGAAAATATATTGATTCTTAGAAAATAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCGGGGTAGGAGCCCTCGGCCCAGTTCGAGTTCAGACAGCGACAGTGATAAATCCAC AGAAGACCCCCCAATGGACTTACCAGCCAATGGCTTCAGCGGTGGAAACCAGCCAGTAAA GAAGAGTTTCTTGGTATACCGTAATGACTGCAGCCTTCCCCGGAGCAGCTCAGACTCTGA GTCCAGCAGCAGTAGTAGCAGCAGCGCTGCCTCAGACCGGACCAGCACAACGCCTTCAAA ACAAGGCCGGGGCAAGCCCTCCTTCTCTCGGGGCACGTTCCCAGAAGATAGCAGTGAAGA TACCTCAGGCACTGAGAATGAGGCCTACTCCGTGGGCACTGGCCGCGGCGTGGGCCACAG CATGGTAAGGAAGAGTCTGGGCAGGGGAGCTGGCTGGCTGTCGGAGGATGAGGACTCCCC GCTGGATGCTCTGGACCTGGTGTGGGCCAAATGCCGAGGGTATCCATCGTACCCAGCTCT GATCATTGATCCAAAGATGCCCCGGGAAGGTATGTTCCACCATGGGGTTCCCATCCCTGT GCCCCCACTGGAGGTGCTGAAACTTGGGGAACAGATGACCCAGGAAGCCCGAGAGCATCT CTACCTCGTCCTCTTCTTTGACAACAAGCGAACCTGGCAGTGGCTGCCCAGAACTAAGCT GGTTCCTCTGGGCGTGAACCAGGACCTTGACAAGGAGAAGATGCTGGAGGGCCGCAAATC CAACATCCGCAAGTCAGTACAGATTGCCTACCACAGGGCTCTGCAGCACCGCAGCAAGGT GCAAGGCGAACAGAGCAGCGAAACCAGCGATAGTGACTAATACTGCCCAGAACAACCCAG CCTACAGTGCCCTGCCACCTCTCTCCTCCCCTTTGCTCACTGTCCTGGAGTGGCATCGGC CTCTGCACTGACTCATTCCTGGTCTTGGGGCCAGTCTCAGGGGAAGCTGGGTGGGGGAGG TCCCTCCCGCCCTGAGTGCAGCTGGACTGTACAGAACACTCCAAGGGCCCATGGTGGCTC TGCGCAATGAGAGGAGAGGTCCTACAGGCCAGAAAGCTCCAGAGACCTCACGGCATTGCA GTGCAAGGTGGTGGGCCAAGGTTAGGACACTGTGTAAACAGGCCATCCCACCACCTGCCT GCTTGTGCCAGGAGAATCCTAACTGCCTAGTGGCCTGAGGCCCCTGAGGTGGTGAGGTGA GCGGGCATCTGCCCAGCCTAGCAGTGGGATTGATGTCTGTCCAGCCCGGAAGAGGGGCAC TAGGTGACCCCCTCCCCTGCTGTTGTAAATACTGTAATTAGCGGAGAATTTAAATTATTC TCATTTGTAACTGCGTTTCCGGGTCGCGCCAGAGTCATTTGGTACTAAAAATCCTGGGGC CTGTCCCCACTTCCCTTCTTCCCATAGATTTCCCTCTCCTTTCAAACTGGTTTGTATTTA TTTCAAAGGAAGAAAATATATTGATTCTTAGAAAATAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 365-481, + strand, RNAz p=0.876696 | |
| 915-1347, - strand, RNAz p=0.999859 | |
| 1373-1479, - strand, RNAz p=0.597417 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 365-481, + strand, RNAz p=0.876696 | |
| 915-1347, - strand, RNAz p=0.999859 | |
| 1373-1479, - strand, RNAz p=0.597417 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 77-225, gnl|bosTau2|chr22 (11895742-11895890) | |
| 77-225, gnl|canFam2|chr20 (11499023-11498895) | |
| 77-225, gnl|danRer3|chrNA (124217441-124217569) | |
| 77-225, gnl|dasNov1|scaffold_32730 (4467-4339) | |
| 77-225, gnl|echTel1|scaffold_311188 (15508-15636) | |
| 77-225, gnl|fr1|chrUn (73046228-73046356) | |
| 77-225, gnl|galGal2|chr12 (11483768-11483876) | |
| 77-225, gnl|hg17|chr3 (9761691-9761819) | |
| 77-225, gnl|Hg17|chr3 (9761691-9761839) | |
| 77-225, gnl|loxAfr1|scaffold_19511 (14181-14309) | |
| 77-225, gnl|mm7|chr6 (113481361-113481489) | |
| 77-225, gnl|Mm7|chr6 (113481361-113481509) | |
| 77-225, gnl|monDom2|scaffold_5 (36552263-36552391) | |
| 77-225, gnl|oryCun1|scaffold_173380 (3595-3467) | |
| 77-225, gnl|panTro1|chr2 (10142102-10142230) | |
| 77-225, gnl|rheMac2|chr2 (51252377-51252249) | |
| 77-225, gnl|rn3|chr4 (149448048-149448176) | |
| 77-225, gnl|tetNig1|chr9 (6723950-6723822) | |
| 77-225, gnl|xenTro1|scaffold_1005 (151847-151975) | |
| 365-481, gnl|bosTau2|chr22 (11896928-11897044) | |
| 365-481, gnl|Hg17|chr3 (9762498-9762614) | |
| 365-481, gnl|Mm7|chr6 (113482898-113483014) | |
| 636-1479, gnl|bosTau2|chr22 (11898279-11899130) | |
| 636-1479, gnl|Hg17|chr3 (9763849-9764685) | |
| 636-1479, gnl|Mm7|chr6 (113484910-113485773) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-225, gnl|bosTau2|chr22 (11895742-11895890) | |
| 77-225, gnl|canFam2|chr20 (11499023-11498895) | |
| 77-225, gnl|danRer3|chrNA (124217441-124217569) | |
| 77-225, gnl|dasNov1|scaffold_32730 (4467-4339) | |
| 77-225, gnl|echTel1|scaffold_311188 (15508-15636) | |
| 77-225, gnl|fr1|chrUn (73046228-73046356) | |
| 77-225, gnl|galGal2|chr12 (11483768-11483876) | |
| 77-225, gnl|hg17|chr3 (9761691-9761819) | |
| 77-225, gnl|Hg17|chr3 (9761691-9761839) | |
| 77-225, gnl|loxAfr1|scaffold_19511 (14181-14309) | |
| 77-225, gnl|mm7|chr6 (113481361-113481489) | |
| 77-225, gnl|Mm7|chr6 (113481361-113481509) | |
| 77-225, gnl|monDom2|scaffold_5 (36552263-36552391) | |
| 77-225, gnl|oryCun1|scaffold_173380 (3595-3467) | |
| 77-225, gnl|panTro1|chr2 (10142102-10142230) | |
| 77-225, gnl|rheMac2|chr2 (51252377-51252249) | |
| 77-225, gnl|rn3|chr4 (149448048-149448176) | |
| 77-225, gnl|tetNig1|chr9 (6723950-6723822) | |
| 77-225, gnl|xenTro1|scaffold_1005 (151847-151975) | |
| 365-481, gnl|bosTau2|chr22 (11896928-11897044) | |
| 365-481, gnl|Hg17|chr3 (9762498-9762614) | |
| 365-481, gnl|Mm7|chr6 (113482898-113483014) | |
| 636-1479, gnl|bosTau2|chr22 (11898279-11899130) | |
| 636-1479, gnl|Hg17|chr3 (9763849-9764685) | |
| 636-1479, gnl|Mm7|chr6 (113484910-113485773) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fce (0.271592) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| pla (0.133672) | |
| cly (0.120642) | |
| eje (0.0988338) |