Non-Coding RNA Search

Ss1.1-Pig4-TMW8050A03.3

Sequence:


               
               GTTCACGCCTGTGGAACTCTCCAAACTAACACATCACATCAGCTGGAGGGGGATTTTCTT
CTTTGGTTTGGTAGAAAACTATCCTTTTCCAAAAGTTGAGCAATGGCACACGTGTCAGCT
GTGCACACCAGTCCAGCACCGAGCCCTGCGTCGGCCAAGTGAGCAAGGGCTCGGCCATGG
GTCCGGTGGTCGGGGGCGAGCCCCTGCCTCTGGTCTGCAGTTGCCACATCAGTAGGGCCT
GTGGTCTCGGGTCAGTACCCTCAGCTAACACAGTCGACAGTGATGGTATGTAGGTTAGAA
ATGAGGATCTTTGCAAGGAAAAAAATCAGCTCAGCTGTCCACTCATTGCCAAATGCCACT
AACAGATTTAGTTTTAAGGAGAAAAGAAAAAAAAAAGTAATCCTGTTTTACTTTGCAGAA
GAAATGAACTTACAGGTGAGCGTTAAGCCTGTAGTGAGAAATGTGTGAAAAGTACAAATC
TGAGTCACTCTTTTTCTAGACGCACACACCCTTGATTATTTTCAGCCTTGCTCTGTATAA
TATGATCTACTACACATGTATGCGTGAGAGGCAACAGCGTACAAACTGATTCTTTTTATT
TTTTTTTAATATAAATAAGCTTAGATTGTAATTGTACAGGTGACCCAATGGAAGTGCAAG
ATAGGGCAGTTTTGACCTTCTTTTCTCTCACTTTCCTGCTTCTGTGGATTCTGTTCTTTC
TTTTCCAGAAGTTATGGTGCTGTATAGGTGCTTTGTGTTTACCCCGGAAAGTGTGATTAT
ATTAGTTTCCCTGTTTGGTAGACAGAATAGTCGGGAACACCTTTGGTACATTTGAAACCT
GTATAATGACGCTCTGATTAGCACAGCATATGCCTACTTCTCCAAAGTGATATATGAAGA
CTCTTTTTCTTTGCATAAAAAGCACTAGACATATAAATGTATAAATATATTTTATCATGT
ACAGGACAAAATGGAACATTCTGCATGAATGTTAGGAATACAGGCTAGTATTTCAGCACA
GACCTCCCTGCATGAGTTCTCGCTGACACTCGCCCCCTGCACTGGGCACCGCCTCCCTTC
CACCAGCACAGACGTGCCACCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCACGCCTGTGGAACTCTCCAAACTAACACATCACATCAGCTGGAGGGGGATTTTCTT
CTTTGGTTTGGTAGAAAACTATCCTTTTCCAAAAGTTGAGCAATGGCACACGTGTCAGCT
GTGCACACCAGTCCAGCACCGAGCCCTGCGTCGGCCAAGTGAGCAAGGGCTCGGCCATGG
GTCCGGTGGTCGGGGGCGAGCCCCTGCCTCTGGTCTGCAGTTGCCACATCAGTAGGGCCT
GTGGTCTCGGGTCAGTACCCTCAGCTAACACAGTCGACAGTGATGGTATGTAGGTTAGAA
ATGAGGATCTTTGCAAGGAAAAAAATCAGCTCAGCTGTCCACTCATTGCCAAATGCCACT
AACAGATTTAGTTTTAAGGAGAAAAGAAAAAAAAAAGTAATCCTGTTTTACTTTGCAGAA
GAAATGAACTTACAGGTGAGCGTTAAGCCTGTAGTGAGAAATGTGTGAAAAGTACAAATC
TGAGTCACTCTTTTTCTAGACGCACACACCCTTGATTATTTTCAGCCTTGCTCTGTATAA
TATGATCTACTACACATGTATGCGTGAGAGGCAACAGCGTACAAACTGATTCTTTTTATT
TTTTTTTAATATAAATAAGCTTAGATTGTAATTGTACAGGTGACCCAATGGAAGTGCAAG
ATAGGGCAGTTTTGACCTTCTTTTCTCTCACTTTCCTGCTTCTGTGGATTCTGTTCTTTC
TTTTCCAGAAGTTATGGTGCTGTATAGGTGCTTTGTGTTTACCCCGGAAAGTGTGATTAT
ATTAGTTTCCCTGTTTGGTAGACAGAATAGTCGGGAACACCTTTGGTACATTTGAAACCT
GTATAATGACGCTCTGATTAGCACAGCATATGCCTACTTCTCCAAAGTGATATATGAAGA
CTCTTTTTCTTTGCATAAAAAGCACTAGACATATAAATGTATAAATATATTTTATCATGT
ACAGGACAAAATGGAACATTCTGCATGAATGTTAGGAATACAGGCTAGTATTTCAGCACA
GACCTCCCTGCATGAGTTCTCGCTGACACTCGCCCCCTGCACTGGGCACCGCCTCCCTTC
CACCAGCACAGACGTGCCACCCGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1104, gnl|bosTau2|chr11 (81529177-81530308)
               

               
               1-1104, gnl|Hg17|chr6 (109108226-109109356)
               

               
               1-1104, gnl|Mm7|chr10 (41996467-41995344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chr11 (81529177-81530308)
               

               
               1-1104, gnl|Hg17|chr6 (109108226-109109356)
               

               
               1-1104, gnl|Mm7|chr10 (41996467-41995344)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-1104, gnl\|bosTau2\|chr11 (81529177-81530308)
	1-1104, gnl\|Hg17\|chr6 (109108226-109109356)
	1-1104, gnl\|Mm7\|chr10 (41996467-41995344)