Non-Coding RNA Search

Ss1.1-Pig4-TMW8050A08.3.5

Sequence:


               
               CAGGGCCAGCGGTGGGACCAGCGGGGCCTGGGGTTCTGCCTGGAGCGGCCGCCTGGGGCA
GGGTGGCGGGCCCGCCTTCCACGCTCAGCTCCCCGCCCTCTTCCCGCAGGGACTTTGGGA
GGCCCCCCCTGGCCAGGGGGCAGCGGAGGACGGCAGGGCCCCGAGGCCAGAAGCAAAAGA
GCCCGGGCTGGGTCCTCGGACAGCGGGTCCACGGCCAAGAAACCTCGGAAGTGCAGCCTC
TGCCACCAGCCTGGACACACCCGTCCCTTCTGTCCTCAGAACAGATGAGGACGGACGCAG
TCGAGAGGGCGCCTTCCCCGCTGCTCGTCTTGGGACACGCGTTTCTCTGGGGCCAGAGGG
TCCGTCGCTGCCCCGGAGGCTTCAAGGAAAGTGGCAGCTCGTGGCGTCTGGCCTGTGTGT
AGGCGTCTGGATCCAGACCGCTCTCGAGTAGGCCGCCTCTGTCGGACAGTGGCTCTCTGT
CTGGGGCTCAGGAACAGCCACGGCCGCTGCTGAGAAGCCGTGGAGGTGGCCCTGCAGCGA
TCCTACGGTGGCAGTGGTGTTAGCGCATTGGCAGGAGTCGGGGGCCCTGCAGCTGAGCCT
CTAGCGCAGGCCCTGGACCGCGCTGAGAAAGGGTGGGAGGCCAGGGAGTGGCTCCTGTTC
TGAAGCGGTGTCTGTAGAAAGCGCTTTTCTTTATCCAGAAGCTGCTGCAGCCGGGCCCGC
CCACAGCTCACGTGCCTTAATAAAGATCGCTACTCCTGGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGCCAGCGGTGGGACCAGCGGGGCCTGGGGTTCTGCCTGGAGCGGCCGCCTGGGGCA
GGGTGGCGGGCCCGCCTTCCACGCTCAGCTCCCCGCCCTCTTCCCGCAGGGACTTTGGGA
GGCCCCCCCTGGCCAGGGGGCAGCGGAGGACGGCAGGGCCCCGAGGCCAGAAGCAAAAGA
GCCCGGGCTGGGTCCTCGGACAGCGGGTCCACGGCCAAGAAACCTCGGAAGTGCAGCCTC
TGCCACCAGCCTGGACACACCCGTCCCTTCTGTCCTCAGAACAGATGAGGACGGACGCAG
TCGAGAGGGCGCCTTCCCCGCTGCTCGTCTTGGGACACGCGTTTCTCTGGGGCCAGAGGG
TCCGTCGCTGCCCCGGAGGCTTCAAGGAAAGTGGCAGCTCGTGGCGTCTGGCCTGTGTGT
AGGCGTCTGGATCCAGACCGCTCTCGAGTAGGCCGCCTCTGTCGGACAGTGGCTCTCTGT
CTGGGGCTCAGGAACAGCCACGGCCGCTGCTGAGAAGCCGTGGAGGTGGCCCTGCAGCGA
TCCTACGGTGGCAGTGGTGTTAGCGCATTGGCAGGAGTCGGGGGCCCTGCAGCTGAGCCT
CTAGCGCAGGCCCTGGACCGCGCTGAGAAAGGGTGGGAGGCCAGGGAGTGGCTCCTGTTC
TGAAGCGGTGTCTGTAGAAAGCGCTTTTCTTTATCCAGAAGCTGCTGCAGCCGGGCCCGC
CCACAGCTCACGTGCCTTAATAAAGATCGCTACTCCTGGAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26330208|dbj|BAC28834.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26330208|dbj|BAC28834.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-746, + strand, RNAz p=0.9833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-746, + strand, RNAz p=0.9833

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               75-319, gnl|bosTau2|chr19 (26634283-26634038)
               

               
               75-319, gnl|Hg17|chr17 (18119045-18118809)
               

               
               75-319, gnl|Mm7|chr11 (60822279-60822081)
               


               
               457-746, gnl|bosTau2|chr19 (26633938-26633660)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-319, gnl|bosTau2|chr19 (26634283-26634038)
               

               
               75-319, gnl|Hg17|chr17 (18119045-18118809)
               

               
               75-319, gnl|Mm7|chr11 (60822279-60822081)
               


               
               457-746, gnl|bosTau2|chr19 (26633938-26633660)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	75-319, gnl\|bosTau2\|chr19 (26634283-26634038)
	75-319, gnl\|Hg17\|chr17 (18119045-18118809)
	75-319, gnl\|Mm7\|chr11 (60822279-60822081)

	457-746, gnl\|bosTau2\|chr19 (26633938-26633660)

	fcc (0.197785)
	nep (0.183925)
	eye (0.170503)
	fhi (0.169578)
	cst (0.140036)
	nca (0.136874)
	cly (0.120642)
	jca (0.11396)
	nbm (0.0993246)
	eje (0.0988338)