Non-Coding RNA Search

Ss1.1-Pig4-TMW8050A20.3

Sequence:


               
               CAATGGAGACGGCGCGGGACTTCGCGGGAGCCCTCCTCAGGCCCCTGACGTTCATGGGGC
TGCAGACCAGGAAGGTGCTGCTCACACCCCTCATGCATCCTGCTCGCCCCTTCCGAGTTT
CCAACCACAACCGGAGCAGCCGACGGGGGGTGACAGCCAGCAGCCTGCAGGAGCTCCTCA
GCAAGACCCTGGATGCCCTGGTTATCGCCAGCAGAGTGGTCACTTTAGTGTTGGAGGAAG
ATGGCACCGTGGTAGATACAGAGGAGTTCTTCCAGATGCTGGGGGACAACACACACTTCA
TGGTCCTGGAGAAAGGACAAAAGTGGACACCGGCTGGTACCTACATCCCCGCCCCCCAGA
AGCCTAAGAGATCGGGAATAGCAAGAGTCACCTTTGACCTGTACAAGCTGAACCCTAAGG
ATGTCATCGGCTGCCTCAACGTCAAGGCCACCATGTACGAGATGTACTCCGTGTCCTATG
ACATCCGGTGCACAGGGCTCAAGGCCCTGCTGAGGAGCCTGTTGCGGTTCCTGTCCCACA
CCGCCCAGGTGACTGGCCAGTGTCTCATCTACATGGGCACGTACATGCTCCGAATGCTGG
CTGACACGGAGGAGCAGGCGGTGCCTGGTGTGCGCCCTAGGCGGGGGCTCACAAGTGGAT
AGGGGCTCTGCCCCCCTTGACCCATCTGATTCCTTTCTAATTCGAAGACACTGTTCGTAC
ATGTGCATCTATGGGCGGTGGGCCCTTCTGCTCAGGAACAGGGGCTTGAGGGCACGTGTC
TTGAGGGCACGTGTCAGGGCGGGGCAGCAGGTGCCCCGTGGGGGTGGGGGATAAGGGTCA
GCGTGCATGCACAAGGCCCTGGGCTCCTGCAATAAACCCATGACAAAACTTCCATGCTTC
CTCTTCATCTCTGCTTCATCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGGAGACGGCGCGGGACTTCGCGGGAGCCCTCCTCAGGCCCCTGACGTTCATGGGGC
TGCAGACCAGGAAGGTGCTGCTCACACCCCTCATGCATCCTGCTCGCCCCTTCCGAGTTT
CCAACCACAACCGGAGCAGCCGACGGGGGGTGACAGCCAGCAGCCTGCAGGAGCTCCTCA
GCAAGACCCTGGATGCCCTGGTTATCGCCAGCAGAGTGGTCACTTTAGTGTTGGAGGAAG
ATGGCACCGTGGTAGATACAGAGGAGTTCTTCCAGATGCTGGGGGACAACACACACTTCA
TGGTCCTGGAGAAAGGACAAAAGTGGACACCGGCTGGTACCTACATCCCCGCCCCCCAGA
AGCCTAAGAGATCGGGAATAGCAAGAGTCACCTTTGACCTGTACAAGCTGAACCCTAAGG
ATGTCATCGGCTGCCTCAACGTCAAGGCCACCATGTACGAGATGTACTCCGTGTCCTATG
ACATCCGGTGCACAGGGCTCAAGGCCCTGCTGAGGAGCCTGTTGCGGTTCCTGTCCCACA
CCGCCCAGGTGACTGGCCAGTGTCTCATCTACATGGGCACGTACATGCTCCGAATGCTGG
CTGACACGGAGGAGCAGGCGGTGCCTGGTGTGCGCCCTAGGCGGGGGCTCACAAGTGGAT
AGGGGCTCTGCCCCCCTTGACCCATCTGATTCCTTTCTAATTCGAAGACACTGTTCGTAC
ATGTGCATCTATGGGCGGTGGGCCCTTCTGCTCAGGAACAGGGGCTTGAGGGCACGTGTC
TTGAGGGCACGTGTCAGGGCGGGGCAGCAGGTGCCCCGTGGGGGTGGGGGATAAGGGTCA
GCGTGCATGCACAAGGCCCTGGGCTCCTGCAATAAACCCATGACAAAACTTCCATGCTTC
CTCTTCATCTCTGCTTCATCTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6680944|ref|NP_031728.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6680944|ref|NP_031728.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-515, - strand, RNAz p=0.602218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-515, - strand, RNAz p=0.602218

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               39-185, gnl|bosTau2|chr24 (29241313-29241167)
               

               
               39-185, gnl|Hg17|chr18 (12252822-12252968)
               

               
               39-185, gnl|Mm7|chr18 (67751003-67751149)
               


               
               332-515, gnl|bosTau2|chr24 (29237243-29237060)
               

               
               332-515, gnl|Hg17|chr18 (12264091-12264274)
               

               
               332-515, gnl|Mm7|chr18 (67758669-67758852)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-185, gnl|bosTau2|chr24 (29241313-29241167)
               

               
               39-185, gnl|Hg17|chr18 (12252822-12252968)
               

               
               39-185, gnl|Mm7|chr18 (67751003-67751149)
               


               
               332-515, gnl|bosTau2|chr24 (29237243-29237060)
               

               
               332-515, gnl|Hg17|chr18 (12264091-12264274)
               

               
               332-515, gnl|Mm7|chr18 (67758669-67758852)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cga (0.558191)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	39-185, gnl\|bosTau2\|chr24 (29241313-29241167)
	39-185, gnl\|Hg17\|chr18 (12252822-12252968)
	39-185, gnl\|Mm7\|chr18 (67751003-67751149)

	332-515, gnl\|bosTau2\|chr24 (29237243-29237060)
	332-515, gnl\|Hg17\|chr18 (12264091-12264274)
	332-515, gnl\|Mm7\|chr18 (67758669-67758852)

	cga (0.558191)
	ton (0.1755)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)
	cly (0.120642)
	med (0.116252)