Non-Coding RNA Search

Ss1.1-Pig4-TMW8050A22.3

Sequence:


               
               TGGATTGCAGGCTGCAGGCTGGGCTCCAAGCAACAATCAAGAGCCCAGCAGGTCCCCGTT
TGCCCGCCAGTCCTTGAAACCTGTTCTCCGTATGTCTGTTCAGCCTTAATGGCTTCACTT
TCCTGCTGTATTCCACCCACCCCACCCACCCCACCCACCCCTGTGGGTGGATGGGAGGAC
TGGGGAGGGGAAAGGGGACATTGTGTCAAGAAGTGCTTTATCCGGAGAAGCAAATTTTGC
ACGATTGGACCGCAGCTCTTGTTTTGTATTGTTTGTGTATTTGTGTGAATTTTTCCCTCC
AAGAAGCTTTACTTTTCTTCTCACACTCAGCTCTCCCTTCGCTCCCTTCCTTTTATCTTT
TGTGCTGGGGTGGGGAGAGAAAACGCGTGTTGAATTCCTGGAGGAGACCAAACAACGCAA
AACAAACAATCAAAAAATACTTGTCTATTTTGTGTTGGATGAGACCAAATCAAACAAAAG
TTACCTGTATGTCAAAGTAAAAATGACAAATGGACATTCCTGCTTATTCTTTCAAAGAGA
TTCTCTCAGATGCACTTTTAGGACTAACAACCTGGATTTTTTTTTTTTTTTAATTGACAT
TCTGGAATACTTTAAAAGCCTGATGTTCCTGGGTGGCCTGAATCATGTCAGAAGAGAATG
GAAGCTGTGATGACCAAGTCCCCAATCTCATAGTGGTTTCTTTGCCGAATGCACCTGGGT
TTTCCAGGCAGCTTGTTTTTGTTCATTTGGATCCACTTCTGGGTGAGCACACTGCCATGA
GGCACCTCAGAATCAGGGACCAACCAGCTCCTCTGCTCCAGGATCCTCTTCTGATCTGCC
TTGGGCAGAGGGTGTGGACCTTCCCCTGGGAGCACCTGGCTGGAGGCCACCTGGAAATCA
TAGTGGTTGAAGGTATTGGCAGAGGTGTCCTACAGGCATTTCCCCCATCCTTCTTATTTG
GCACCTTGTACATCAGTATTTATTAAGACACAGCTGAGAGTTGATGGGTGCAGGATTCAT
ACGCCAAGGAAATGGCACTGATTCCAAAGCAATCAAAGAAGAGACCTCAAACCAGATGTT
AATTTGTCCTTTGTGTAACAATGTAACCAAAATATTGATGATAAAAAATCATAATTTAAG
ATTCAGAATAAATGGGTTTGATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATTGCAGGCTGCAGGCTGGGCTCCAAGCAACAATCAAGAGCCCAGCAGGTCCCCGTT
TGCCCGCCAGTCCTTGAAACCTGTTCTCCGTATGTCTGTTCAGCCTTAATGGCTTCACTT
TCCTGCTGTATTCCACCCACCCCACCCACCCCACCCACCCCTGTGGGTGGATGGGAGGAC
TGGGGAGGGGAAAGGGGACATTGTGTCAAGAAGTGCTTTATCCGGAGAAGCAAATTTTGC
ACGATTGGACCGCAGCTCTTGTTTTGTATTGTTTGTGTATTTGTGTGAATTTTTCCCTCC
AAGAAGCTTTACTTTTCTTCTCACACTCAGCTCTCCCTTCGCTCCCTTCCTTTTATCTTT
TGTGCTGGGGTGGGGAGAGAAAACGCGTGTTGAATTCCTGGAGGAGACCAAACAACGCAA
AACAAACAATCAAAAAATACTTGTCTATTTTGTGTTGGATGAGACCAAATCAAACAAAAG
TTACCTGTATGTCAAAGTAAAAATGACAAATGGACATTCCTGCTTATTCTTTCAAAGAGA
TTCTCTCAGATGCACTTTTAGGACTAACAACCTGGATTTTTTTTTTTTTTTAATTGACAT
TCTGGAATACTTTAAAAGCCTGATGTTCCTGGGTGGCCTGAATCATGTCAGAAGAGAATG
GAAGCTGTGATGACCAAGTCCCCAATCTCATAGTGGTTTCTTTGCCGAATGCACCTGGGT
TTTCCAGGCAGCTTGTTTTTGTTCATTTGGATCCACTTCTGGGTGAGCACACTGCCATGA
GGCACCTCAGAATCAGGGACCAACCAGCTCCTCTGCTCCAGGATCCTCTTCTGATCTGCC
TTGGGCAGAGGGTGTGGACCTTCCCCTGGGAGCACCTGGCTGGAGGCCACCTGGAAATCA
TAGTGGTTGAAGGTATTGGCAGAGGTGTCCTACAGGCATTTCCCCCATCCTTCTTATTTG
GCACCTTGTACATCAGTATTTATTAAGACACAGCTGAGAGTTGATGGGTGCAGGATTCAT
ACGCCAAGGAAATGGCACTGATTCCAAAGCAATCAAAGAAGAGACCTCAAACCAGATGTT
AATTTGTCCTTTGTGTAACAATGTAACCAAAATATTGATGATAAAAAATCATAATTTAAG
ATTCAGAATAAATGGGTTTGATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               724-841, - strand, RNAz p=0.701802

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               724-841, - strand, RNAz p=0.701802

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1164, gnl|bosTau2|chr24 (5571221-5572354)
               

               
               1-1164, gnl|Hg17|chr18 (68356018-68354900)
               

               
               1-1164, gnl|Mm7|chr18 (87066096-87067235)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1164, gnl|bosTau2|chr24 (5571221-5572354)
               

               
               1-1164, gnl|Hg17|chr18 (68356018-68354900)
               

               
               1-1164, gnl|Mm7|chr18 (87066096-87067235)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	1-1164, gnl\|bosTau2\|chr24 (5571221-5572354)
	1-1164, gnl\|Hg17\|chr18 (68356018-68354900)
	1-1164, gnl\|Mm7\|chr18 (87066096-87067235)