Non-Coding RNA Search

Ss1.1-Pig4-TMW8050B06.3

Sequence:


               
               CTTCCGTGCCCCCGCCGGAGACCAGCCCCGGAGGCCGCCCGGGCCCGTCCCTGTGCCCGG
CACCATGAAGCAAGAGTCTGCAGCCCAGAACACCCCGCCAGCCTCACCGTCCCCCTCGCC
GCACCCCCAGGACGACAGCGACCCCCAAGCGTTGTGGATTTTCGGGTACGGCTCCCTGGT
GTGGAGGCCCGACTTCGCCTACAGCGACAGCCGGGTGGGCTTCGTGCGCGGCTACAGCCG
CCGCTTCTGGCAGGGAGACACCTTCCATCGGGGCAGTGACAAGATGCCTGGTCGTGTGGT
AACCCTCCTTGAAGATTGTGAGGGCTGCACTTGGGGCGTGGTGTACCAGGTGCGTGGAGA
GCAGGTGAATGAGGCCCTGAAGTACCTGAATGTGCGGGAGGCAGTGCTCGGTGGCTATGA
CACCAAGGAGGTCACCTTCTACCCTCAAGATAGCCCTGACCAACCACTCAAGGCACTGGC
CTACGTGGCCACCCCGCAGAACCCTGGTTACCTGGGCCCTGCGCCCGAGAAGGCCATCGC
TACACAGATCCTGGCCTGCCGAGGCTTCTCTGGCCACAACCTTGAGTACTTGCTACGCCT
GGCGGACTTCATGCAGCTCTGTGGGCCCCAGGCACAGGACGAGCACCTGGCAGCCATCGT
GGATGCTGTAGGAACCATGCTGCCCTGCTTCTGCCCCACTGAGCAGGCTTTGGCACTGGT
CTGAGGGGCTGAGCCCCTGCAGGGAGTGCCTCCGTGGATGCTGAGGCCAGGTCCCCACTC
CAGTGCACACAGACAGACTTGACACAGCTGGGGCCCTCTGAGAGACCTTGGTGGTTGGCT
GGGAGCCTCTCTTAAGCCCCTGCCTGTCTGCCCCAGCCCCCAGCTCTCTTGCTTGACACT
GACTACTTGAAACTTTATTTATTGCACCATGTTGGTGTGGTGGGCAGGGTGGGGGGCCTG
CCCTGGACACAGGGGCCCTGCTGAGCGGTGCCCTATCCCAGGCACCTGGTGCCTGACCAG
ATTCCCCCCAGTGCTGCTGCTAACCCCATACTACCCAGGCCTCTACCTCCCCAGGGAGCC
TCCAAGAGCCTTGACCTCTGCCCCCCAGCCCAGACCAACCATTTCATAGCCCCAGAAATA
CCACTTGCCAAAGGTCCCAGTCTGCTGTTGAGGGTGTGGGAGGGAGTGAGGAGAGGCAGC
CCTACAAGAACTGAGGCTCCTGCCAGTCCTGCTCATCCTCCAGGTGCCCAGGGCAGAGCT
GGATTTGGAGCCCAGACACAGCTGCTGAGGCTGTATCTGGTCCTCTTACCCATTTGGCTT
TGTTTCCCTGTCCCTCTTTCTGTCTGGACCACTCCTGTCTGTCAGTCTATTCCTGGGAAG
CTCATTGCTAAAGGCTCTGGAACCTTCCCAGTCTGTCCCATACCTTTATCCATAAACTGA
TCTCATTATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCGTGCCCCCGCCGGAGACCAGCCCCGGAGGCCGCCCGGGCCCGTCCCTGTGCCCGG
CACCATGAAGCAAGAGTCTGCAGCCCAGAACACCCCGCCAGCCTCACCGTCCCCCTCGCC
GCACCCCCAGGACGACAGCGACCCCCAAGCGTTGTGGATTTTCGGGTACGGCTCCCTGGT
GTGGAGGCCCGACTTCGCCTACAGCGACAGCCGGGTGGGCTTCGTGCGCGGCTACAGCCG
CCGCTTCTGGCAGGGAGACACCTTCCATCGGGGCAGTGACAAGATGCCTGGTCGTGTGGT
AACCCTCCTTGAAGATTGTGAGGGCTGCACTTGGGGCGTGGTGTACCAGGTGCGTGGAGA
GCAGGTGAATGAGGCCCTGAAGTACCTGAATGTGCGGGAGGCAGTGCTCGGTGGCTATGA
CACCAAGGAGGTCACCTTCTACCCTCAAGATAGCCCTGACCAACCACTCAAGGCACTGGC
CTACGTGGCCACCCCGCAGAACCCTGGTTACCTGGGCCCTGCGCCCGAGAAGGCCATCGC
TACACAGATCCTGGCCTGCCGAGGCTTCTCTGGCCACAACCTTGAGTACTTGCTACGCCT
GGCGGACTTCATGCAGCTCTGTGGGCCCCAGGCACAGGACGAGCACCTGGCAGCCATCGT
GGATGCTGTAGGAACCATGCTGCCCTGCTTCTGCCCCACTGAGCAGGCTTTGGCACTGGT
CTGAGGGGCTGAGCCCCTGCAGGGAGTGCCTCCGTGGATGCTGAGGCCAGGTCCCCACTC
CAGTGCACACAGACAGACTTGACACAGCTGGGGCCCTCTGAGAGACCTTGGTGGTTGGCT
GGGAGCCTCTCTTAAGCCCCTGCCTGTCTGCCCCAGCCCCCAGCTCTCTTGCTTGACACT
GACTACTTGAAACTTTATTTATTGCACCATGTTGGTGTGGTGGGCAGGGTGGGGGGCCTG
CCCTGGACACAGGGGCCCTGCTGAGCGGTGCCCTATCCCAGGCACCTGGTGCCTGACCAG
ATTCCCCCCAGTGCTGCTGCTAACCCCATACTACCCAGGCCTCTACCTCCCCAGGGAGCC
TCCAAGAGCCTTGACCTCTGCCCCCCAGCCCAGACCAACCATTTCATAGCCCCAGAAATA
CCACTTGCCAAAGGTCCCAGTCTGCTGTTGAGGGTGTGGGAGGGAGTGAGGAGAGGCAGC
CCTACAAGAACTGAGGCTCCTGCCAGTCCTGCTCATCCTCCAGGTGCCCAGGGCAGAGCT
GGATTTGGAGCCCAGACACAGCTGCTGAGGCTGTATCTGGTCCTCTTACCCATTTGGCTT
TGTTTCCCTGTCCCTCTTTCTGTCTGGACCACTCCTGTCTGTCAGTCTATTCCTGGGAAG
CTCATTGCTAAAGGCTCTGGAACCTTCCCAGTCTGTCCCATACCTTTATCCATAAACTGA
TCTCATTATCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BUX1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BUX1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               440-599, - strand, RNAz p=0.88437
               

               
               680-799, - strand, RNAz p=0.807748
               

               
               840-1065, - strand, RNAz p=0.999182

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-599, - strand, RNAz p=0.88437
               

               
               680-799, - strand, RNAz p=0.807748
               

               
               840-1065, - strand, RNAz p=0.999182

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-286, gnl|bosTau2|chr10 (25762060-25762345)
               

               
               1-286, gnl|Hg17|chr15 (39033010-39033304)
               

               
               1-286, gnl|Mm7|chr2 (119092188-119092485)
               


               
               321-1223, gnl|bosTau2|chr10 (25763252-25764157)
               

               
               321-1223, gnl|Hg17|chr15 (39034861-39035756)
               

               
               321-1223, gnl|Mm7|chr2 (119094036-119094933)
               


               
               1277-1451, gnl|bosTau2|chr10 (25764163-25764346)
               

               
               1277-1451, gnl|Hg17|chr15 (39035809-39036005)
               

               
               1277-1451, gnl|Mm7|chr2 (119094983-119095164)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr10 (25762060-25762345)
               

               
               1-286, gnl|Hg17|chr15 (39033010-39033304)
               

               
               1-286, gnl|Mm7|chr2 (119092188-119092485)
               


               
               321-1223, gnl|bosTau2|chr10 (25763252-25764157)
               

               
               321-1223, gnl|Hg17|chr15 (39034861-39035756)
               

               
               321-1223, gnl|Mm7|chr2 (119094036-119094933)
               


               
               1277-1451, gnl|bosTau2|chr10 (25764163-25764346)
               

               
               1277-1451, gnl|Hg17|chr15 (39035809-39036005)
               

               
               1277-1451, gnl|Mm7|chr2 (119094983-119095164)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cov (0.132153)

	440-599, - strand, RNAz p=0.88437
	680-799, - strand, RNAz p=0.807748
	840-1065, - strand, RNAz p=0.999182

	1-286, gnl\|bosTau2\|chr10 (25762060-25762345)
	1-286, gnl\|Hg17\|chr15 (39033010-39033304)
	1-286, gnl\|Mm7\|chr2 (119092188-119092485)

	321-1223, gnl\|bosTau2\|chr10 (25763252-25764157)
	321-1223, gnl\|Hg17\|chr15 (39034861-39035756)
	321-1223, gnl\|Mm7\|chr2 (119094036-119094933)

	1277-1451, gnl\|bosTau2\|chr10 (25764163-25764346)
	1277-1451, gnl\|Hg17\|chr15 (39035809-39036005)
	1277-1451, gnl\|Mm7\|chr2 (119094983-119095164)

	ecc (0.23007)
	ton (0.1755)
	fbs (0.175346)
	fhi (0.169578)
	cov (0.132153)