Non-Coding RNA Search

Ss1.1-Pig4-TMW8050B20.5

Sequence:


               
               CGTACTTAAAGACTCATCTGAGCTTGTGAAATGGCTGCATGGTGCACCAGCATTTGCTAC
CTACAAAAAACCCAAAAACCAAAACCCAGAGTTGGGAAGGTTCCCGCTCCTCTAAGTTGA
TCCAGCCTGCCCCCAACCGATTGTTTTTTGACTGAATATCTAGGATGACAGCAAGTGCAG
CTTGAAACGGGGAAGCCCACCAGGCCTGGCTCCGGTGAAGGGCAGGGAGGCTGGAGGGCG
GCGGGAGGCCTCCGAGGCCTTTGGTTTGGGTGCCAGCCTGGGAGGGGCAGAGAAGGCAAG
GCTGAGGGGATCCTGGTGAGGGAGGAAAGAAGGAGCGTGGCCCTGCTGGGTCTCAAAGGT
GATAAGGAGAGAACTGAAGAAAGTTCTTGCTGGCTGACAGGAAGGTTGCAGTGTTGCAAT
GTGGAAACTCATCCATCTCCCCTCCCTACGTCCATCTGTGCCGTGTCTGTGTGTAGGTTT
TCTAGAGGTAGCATTAGATGGGTGACGTTTTCTCCCCATTCCTAACTATTGTAACTTGAT
ATGCAAAAGACAAAACCCCACAAAACTCTTCCTGCCATGGGCTTGCAGATTGAAGCACTT
TCGATGTTGGGCGCTGGCATCTGTGTTCTGGGCATCATCCTGACCCTGCCTGGATCGCTG
TAATTTTATACACCAGACTTTTTTTTTTTTTTCCATAAATGTTATAATTTTGTGTCTGTC
TTTATAAACTATTATAAGTACTATTTTTGTTATAATTCAAAATAGATATTTAGTATAAAG
TTTTTGCTGTTAAATATTTGTTATTTAGTAAAATATGGATTTTTTCTCTATTGTAAACAT
GGTTCAAAATATTAATATGTTTTTATCACAGTTGTTTTAATATTGAAAAAGCACTTGTGT
GTTTTGTTTTGATATGAAACTGGTGCCGTGTGAGTGTTTTTTGCTGTCATGTGGTTTTAA
TCTGTATATAATATTCCATGTTGCATATTAAAAAATGTTGTGCATTTTGTGATTTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTACTTAAAGACTCATCTGAGCTTGTGAAATGGCTGCATGGTGCACCAGCATTTGCTAC
CTACAAAAAACCCAAAAACCAAAACCCAGAGTTGGGAAGGTTCCCGCTCCTCTAAGTTGA
TCCAGCCTGCCCCCAACCGATTGTTTTTTGACTGAATATCTAGGATGACAGCAAGTGCAG
CTTGAAACGGGGAAGCCCACCAGGCCTGGCTCCGGTGAAGGGCAGGGAGGCTGGAGGGCG
GCGGGAGGCCTCCGAGGCCTTTGGTTTGGGTGCCAGCCTGGGAGGGGCAGAGAAGGCAAG
GCTGAGGGGATCCTGGTGAGGGAGGAAAGAAGGAGCGTGGCCCTGCTGGGTCTCAAAGGT
GATAAGGAGAGAACTGAAGAAAGTTCTTGCTGGCTGACAGGAAGGTTGCAGTGTTGCAAT
GTGGAAACTCATCCATCTCCCCTCCCTACGTCCATCTGTGCCGTGTCTGTGTGTAGGTTT
TCTAGAGGTAGCATTAGATGGGTGACGTTTTCTCCCCATTCCTAACTATTGTAACTTGAT
ATGCAAAAGACAAAACCCCACAAAACTCTTCCTGCCATGGGCTTGCAGATTGAAGCACTT
TCGATGTTGGGCGCTGGCATCTGTGTTCTGGGCATCATCCTGACCCTGCCTGGATCGCTG
TAATTTTATACACCAGACTTTTTTTTTTTTTTCCATAAATGTTATAATTTTGTGTCTGTC
TTTATAAACTATTATAAGTACTATTTTTGTTATAATTCAAAATAGATATTTAGTATAAAG
TTTTTGCTGTTAAATATTTGTTATTTAGTAAAATATGGATTTTTTCTCTATTGTAAACAT
GGTTCAAAATATTAATATGTTTTTATCACAGTTGTTTTAATATTGAAAAAGCACTTGTGT
GTTTTGTTTTGATATGAAACTGGTGCCGTGTGAGTGTTTTTTGCTGTCATGTGGTTTTAA
TCTGTATATAATATTCCATGTTGCATATTAAAAAATGTTGTGCATTTTGTGATTTTGAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               284-395, - strand, RNAz p=0.985225
               

               
               626-739, - strand, RNAz p=0.962924

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-395, - strand, RNAz p=0.985225
               

               
               626-739, - strand, RNAz p=0.962924

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-1020, gnl|bosTau2|chr11 (11138626-11137637)
               

               
               6-1020, gnl|Hg17|chr2 (72269076-72268074)
               

               
               6-1020, gnl|Mm7|chr6 (84601704-84600791)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1020, gnl|bosTau2|chr11 (11138626-11137637)
               

               
               6-1020, gnl|Hg17|chr2 (72269076-72268074)
               

               
               6-1020, gnl|Mm7|chr6 (84601704-84600791)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ebs (0.354904)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               fat (0.147427)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               mgp (0.230681)
               

               
               fat (0.147427)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)

	284-395, - strand, RNAz p=0.985225
	626-739, - strand, RNAz p=0.962924

	6-1020, gnl\|bosTau2\|chr11 (11138626-11137637)
	6-1020, gnl\|Hg17\|chr2 (72269076-72268074)
	6-1020, gnl\|Mm7\|chr6 (84601704-84600791)

	ebs (0.354904)
	cte (0.29274)
	csk (0.281492)
	mgp (0.230681)
	fat (0.147427)
	ute (0.132784)
	cbr (0.127975)
	tra (0.123092)