Non-Coding RNA Search

Ss1.1-Pig4-TMW8050B22.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTAACTTAATGTGCAGTTTTCAGTTGCAGTTAATCCGTTTGAAG
CTTATTTTAACCCATTCTTTAGTTTTAAACCTTATTGGTTCCAACCTAGAAAGAAAAGAA
CCAAAGGGGGGAAAAAAAAAATCCTCAAATCAAATCAGTCCCCCCAAATACCAACCTTCC
TTTTTTTAAGCAAGAAATGAAAAAAAAAATTAAATATTTTTTCTCCTTCTTTTACTCCGA
AGTGTTAATTGAAGTTGTAAAAATTAGCCTCAGTTAGACTGAGAAAAGGGAAAAAAAAGC
TCAGCAAAAGGCAATATGTACCTAAACTGCTCCTCAAATCAGTTTGATTGAGTTTTCCAA
ATGCCCTTTTAAAAAGGACTTTCCTGACCCATTAAATTTAATGTGAGGCTATGTTTGTTA
GTTGGGAGGTAAAAAATTTTAAGTCCTGCAGCAAACGTTAATGAGGGCTTTGTCTTAACT
AACCAAGGAGACTGCAGCAACGGACTCCAGACCAGGACAGAACACATTCCCCCCACCCCA
AAACCCAGCCCAGGAGCTGCATTTTGTATGAAGACATTACAGATTAATAAATGATAGCAC
CATGGTTTTAGAAATTAAGTTAATGTTTCAGTAATTAACATTTAGTCCAACTTTTTTTTT
AAACATTCTAGTCACAGGCCAGAAATTAAGAACCCAAATTATTTTTATGTGCAAGTAAGA
AAACCTTAAAATCTTAACCATCAAAAGAATTAAATTCTGCATAAAATTCTAAAATATACT
ATCCTCCTATTTTTAAAGGAATTAGGAACAAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTAACTTAATGTGCAGTTTTCAGTTGCAGTTAATCCGTTTGAAG
CTTATTTTAACCCATTCTTTAGTTTTAAACCTTATTGGTTCCAACCTAGAAAGAAAAGAA
CCAAAGGGGGGAAAAAAAAAATCCTCAAATCAAATCAGTCCCCCCAAATACCAACCTTCC
TTTTTTTAAGCAAGAAATGAAAAAAAAAATTAAATATTTTTTCTCCTTCTTTTACTCCGA
AGTGTTAATTGAAGTTGTAAAAATTAGCCTCAGTTAGACTGAGAAAAGGGAAAAAAAAGC
TCAGCAAAAGGCAATATGTACCTAAACTGCTCCTCAAATCAGTTTGATTGAGTTTTCCAA
ATGCCCTTTTAAAAAGGACTTTCCTGACCCATTAAATTTAATGTGAGGCTATGTTTGTTA
GTTGGGAGGTAAAAAATTTTAAGTCCTGCAGCAAACGTTAATGAGGGCTTTGTCTTAACT
AACCAAGGAGACTGCAGCAACGGACTCCAGACCAGGACAGAACACATTCCCCCCACCCCA
AAACCCAGCCCAGGAGCTGCATTTTGTATGAAGACATTACAGATTAATAAATGATAGCAC
CATGGTTTTAGAAATTAAGTTAATGTTTCAGTAATTAACATTTAGTCCAACTTTTTTTTT
AAACATTCTAGTCACAGGCCAGAAATTAAGAACCCAAATTATTTTTATGTGCAAGTAAGA
AAACCTTAAAATCTTAACCATCAAAAGAATTAAATTCTGCATAAAATTCTAAAATATACT
ATCCTCCTATTTTTAAAGGAATTAGGAACAAAAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               255-449, - strand, RNAz p=0.943624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-449, - strand, RNAz p=0.943624

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               446-513, + strand, RNAmicro p=0.908872

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               446-513, + strand, RNAmicro p=0.908872

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-815, gnl|bosTau2|chr21 (29275059-29275885)
               

               
               1-815, gnl|Hg17|chr14 (33341352-33340528)
               

               
               1-815, gnl|Mm7|chr12 (52088980-52088113)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-815, gnl|bosTau2|chr21 (29275059-29275885)
               

               
               1-815, gnl|Hg17|chr14 (33341352-33340528)
               

               
               1-815, gnl|Mm7|chr12 (52088980-52088113)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-815, gnl\|bosTau2\|chr21 (29275059-29275885)
	1-815, gnl\|Hg17\|chr14 (33341352-33340528)
	1-815, gnl\|Mm7\|chr12 (52088980-52088113)