Non-Coding RNA Search

Ss1.1-Pig4-TMW8050C06.3

Sequence:


               
               TTGGTGGCTCTGGCTGTTCTCCCGAGGACTGGAGACCACAGAGGTGGATGAAGCGCTCTT
GGAAGAAGAGACAGCCTGATGCCTCCCACAGGCCCACCCCGATCCCGGGGCAGCGCCTTT
ATCCCGTGCCAGTGACACATGCCAGCTGTATACCGCCAGGGGCCTTGGCCGTGACCCATC
CAGCACCCACATGCCCACCCTCACCTGTCTGTGCAGGTGCGCCCAGGGGTGCTGACCAAA
GCCTCAAGGATGCACCTTTCTTGAGGAGCCGCCAGAGCTCTTCCCCAAGGGAGGCTAAAG
AGACCTGTCTGTGGGCGGCAGCCCCTCGCAGCCCCAGCCACTCCTGCCCTCCCCCGGCAT
AGGCGGGCCCCAACCCGCCTCACTCAGGACCCTTCCAGCCCGTGCCTCCCTCCTTAAGCC
GAGAAGGAGCCTTGATGCGGTGCCTTATCTCAGCCCCACCCGCAGCGGGTGAGACGCCCA
GCCTTCCTCCTCGTAACCAAAACCTCACTGCTCATTAAAGGGTCTTATTTATAAATTATA
AATACCGTTAGTCGGGCCCCCAGACCAAGTAGCTGCTCATATTGCCCTTTCTAATCCTAC
ATGTGGAACGTATGTAAAAAAATTTTGTCTTATTTTTGTTCCCGTCTTACCCACAAACCG
TTACTACTTGAAACTTTTGAAAAACTCGATGTGTGTAAAGGCTAAAGGGAAGCAGTTTGA
CCGATCCTGTGATTTGTACTGTTTACTGCGGAGTTATTTAAAGATTTTGGAATAAATATA
CAAACTACAGTTGTGAAATAAAGGTGTAAATAAATTGTATATTTTGAAAAATAAAAACAT
TGGAAAAGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTGGCTCTGGCTGTTCTCCCGAGGACTGGAGACCACAGAGGTGGATGAAGCGCTCTT
GGAAGAAGAGACAGCCTGATGCCTCCCACAGGCCCACCCCGATCCCGGGGCAGCGCCTTT
ATCCCGTGCCAGTGACACATGCCAGCTGTATACCGCCAGGGGCCTTGGCCGTGACCCATC
CAGCACCCACATGCCCACCCTCACCTGTCTGTGCAGGTGCGCCCAGGGGTGCTGACCAAA
GCCTCAAGGATGCACCTTTCTTGAGGAGCCGCCAGAGCTCTTCCCCAAGGGAGGCTAAAG
AGACCTGTCTGTGGGCGGCAGCCCCTCGCAGCCCCAGCCACTCCTGCCCTCCCCCGGCAT
AGGCGGGCCCCAACCCGCCTCACTCAGGACCCTTCCAGCCCGTGCCTCCCTCCTTAAGCC
GAGAAGGAGCCTTGATGCGGTGCCTTATCTCAGCCCCACCCGCAGCGGGTGAGACGCCCA
GCCTTCCTCCTCGTAACCAAAACCTCACTGCTCATTAAAGGGTCTTATTTATAAATTATA
AATACCGTTAGTCGGGCCCCCAGACCAAGTAGCTGCTCATATTGCCCTTTCTAATCCTAC
ATGTGGAACGTATGTAAAAAAATTTTGTCTTATTTTTGTTCCCGTCTTACCCACAAACCG
TTACTACTTGAAACTTTTGAAAAACTCGATGTGTGTAAAGGCTAAAGGGAAGCAGTTTGA
CCGATCCTGTGATTTGTACTGTTTACTGCGGAGTTATTTAAAGATTTTGGAATAAATATA
CAAACTACAGTTGTGAAATAAAGGTGTAAATAAATTGTATATTTTGAAAAATAAAAACAT
TGGAAAAGAAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               352-466, + strand, RNAz p=0.858622

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-466, + strand, RNAz p=0.858622

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               26-231, gnl|bosTau2|chr18 (1002620-1002420)
               

               
               26-231, gnl|canFam2|chr5 (78928199-78928000)
               

               
               26-231, gnl|dasNov1|scaffold_35156 (7365-7498)
               

               
               26-231, gnl|echTel1|scaffold_278755 (39872-40058)
               

               
               26-231, gnl|hg17|chr16 (73304964-73305091)
               

               
               26-231, gnl|mm7|chr8 (109945809-109946005)
               

               
               26-231, gnl|Mm7|chr8 (109946020-109945829)
               

               
               26-231, gnl|panTro1|chr18 (67694590-67694698)
               

               
               26-231, gnl|rheMac2|chr20 (72818164-72818292)
               

               
               26-231, gnl|rn3|chr19 (41273619-41273819)
               


               
               273-850, gnl|bosTau2|chr18 (1002356-1001771)
               

               
               273-850, gnl|Hg17|chr16 (73304912-73304365)
               

               
               273-850, gnl|Mm7|chr8 (109945756-109945189)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-231, gnl|bosTau2|chr18 (1002620-1002420)
               

               
               26-231, gnl|canFam2|chr5 (78928199-78928000)
               

               
               26-231, gnl|dasNov1|scaffold_35156 (7365-7498)
               

               
               26-231, gnl|echTel1|scaffold_278755 (39872-40058)
               

               
               26-231, gnl|hg17|chr16 (73304964-73305091)
               

               
               26-231, gnl|mm7|chr8 (109945809-109946005)
               

               
               26-231, gnl|Mm7|chr8 (109946020-109945829)
               

               
               26-231, gnl|panTro1|chr18 (67694590-67694698)
               

               
               26-231, gnl|rheMac2|chr20 (72818164-72818292)
               

               
               26-231, gnl|rn3|chr19 (41273619-41273819)
               


               
               273-850, gnl|bosTau2|chr18 (1002356-1001771)
               

               
               273-850, gnl|Hg17|chr16 (73304912-73304365)
               

               
               273-850, gnl|Mm7|chr8 (109945756-109945189)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               sin (0.349895)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               mas (0.210305)
               

               
               sto (0.179824)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	26-231, gnl\|bosTau2\|chr18 (1002620-1002420)
	26-231, gnl\|canFam2\|chr5 (78928199-78928000)
	26-231, gnl\|dasNov1\|scaffold_35156 (7365-7498)
	26-231, gnl\|echTel1\|scaffold_278755 (39872-40058)
	26-231, gnl\|hg17\|chr16 (73304964-73305091)
	26-231, gnl\|mm7\|chr8 (109945809-109946005)
	26-231, gnl\|Mm7\|chr8 (109946020-109945829)
	26-231, gnl\|panTro1\|chr18 (67694590-67694698)
	26-231, gnl\|rheMac2\|chr20 (72818164-72818292)
	26-231, gnl\|rn3\|chr19 (41273619-41273819)

	273-850, gnl\|bosTau2\|chr18 (1002356-1001771)
	273-850, gnl\|Hg17\|chr16 (73304912-73304365)
	273-850, gnl\|Mm7\|chr8 (109945756-109945189)

	sin (0.349895)
	cst (0.280073)
	cbe (0.239234)
	mas (0.210305)
	sto (0.179824)
	kid (0.129735)
	bla (0.124347)
	pgl (0.118483)