Non-Coding RNA Search

Ss1.1-Pig4-TMW8050C11.5

Sequence:


               
               TCTGACTGAAAGTTCAAGTGACACTGTGGAAATCTGCAACGAGGGGTTGTCATGAAGGCA
GCTTTTCTTTTTCTGAGGAAAAAATAGGCATGGGCTACAGGACTATTTAAAATGTCTCAT
TTACAGTATAAGCTCAAGGTAGATGTAATTTTTACACCTATGAGTATTTGTCCAGTTTCT
GTCTGTTCCTCTCCATTGGATATCTATTCTTTATATGTAAATAAGATAAGGTAATCAATA
GCCTTATTCAAACGTCATCATTTTCACTCATCAAAGATTGTTCCTATGTAGGTCATTGGA
CATTTATTGTAGCACTACATGACTGATTTAAGAAACAAATCTGTAAATGAATTAGCACTT
TCATATTGAAACAAGCCTGCTAGCCTATGTATAAAATAGCAAAATGTTTGCTCTTTATAA
AAAGATGGGGTGTAATGGGGGGGCAGGGGTAATTTCAAGTTATTAATTTAAAAATGAACT
AGCAATTTTGTACCTGGTGACTTTGTGGTGCACTCACCTCTGATAGTGACTTGAATTTGG
TGTGTTAAAAGGGGTTAGTGATAATTCATTGCTGCTAAAAAATGGCAATTCCCTCTGTGT
CCTTTTTTTCTTAAAGCTCTCAGTGTACAAGTGACTATTTGGATACAAGACCTTGCTGTA
ACAAATAGGAAAGGTGATGTTTGAAGCATGTAAATTGGATATAAAGTTCTACTCTTAAAG
AGTTGATCAAAGAGTATGGCTAAACATCTATATATGCAATCTATTAAAAGAACTTAATTC
GGCTATTATGTCTTGATTTGATTGCAGTTTTTTCCTAATTATATATTTTTTTCTCATTGA
TCTGTTTTTATGCTATATCTACAAAGTGCAAAATGGACACTTAAAAAAAATTGACATTTA
ACACCTGCCTGCCTCCCTTTCCCCATCTTCTCTACCCCTCTTGTGGTATTATCTGGTCCT
AAATGGATAGGCTCGAGGTTCAAGTTTCCCCCCCAAACCACTATTGATACCACTGCAAAA
GCAAGCCAGCAACCAGACAACGTCGAGAGGTTGGCTCGCTCCCCTCTCTCCCAACTGCAT
GTTCAAAAATAAGCCTTTATTAATCGTAAACATCTATCAGATGAGTCTTACATTGGGTTA
TTTTTTTATATACATGTACACACACAATATTCCAAATTGAAAGCAACATCCCAATGGATT
CAGAACTGTTAAGTGCTGTTGTCTATAATGGACTAGAAAATTTATAACTGTAAAAATGAA
GCAAATGCACATATTATTTAAAATTTGCGTAATTAAAACCCATTGGTGTTGTGTTTTCTT
GTATGCCAGTAATTAAGCCGCTGCTCTTGGCTCTGTTTGGTTTCTATTTTAACACTGAAG
GAGTGAGAGTATTTCCTATATTTATGAATTTACTATGAAAATCTTGGCAAAAAAAAGAAA
AAAAAGTCTAAAATGTGTGGGTGAAAACTGTTAATCAAGTGTGTTTCTACTTTTTTCCCC
CCAAGTTGGACACCATCTGTGTACCCTAGGTTGCTTCAGGGGATTTCATTATTATGTAAA
ATCAATAAAGTTAAAATGGAGTAGTTGTATATATGCAACATTGTGTACAGAGGGGAGATA
CTGAATAGTATTAAGCATTTTCGTCTTCCTTTACCTTTGATCCCCTTCTTAATATCCAGT
CTACTTTTTAAAATTTCAGACTTCACTGCTCTTTGAATTGATAATTCCAATTTTCACATT
GTTATTGGAAAACCATATCTAATAAAGGTTTTAGTTATTCCCACGCACAGTATGAAAATT
TCGTTTGCTGAAGTTTTGTTACAAGAGAATGTATTGGCATGTCTTTGAGAACAAGTTATA
TTGTCTCCTCTGTCATACAACTCAAACTAATCTCCATTTATGGATTTTGACTGAAATTAA
AGACCTTAAAATTAATTAAATTATATTTAATATTAAATATTGTTTAAATGGTAGTTTCTA
ATGTATTGAATATATACCTCGATTATTTTCAGTATTTCCTTAAGTATTACATCAAATTAG
AGTTTCTTATAGATATGGATCTTGATATGTGTCGATGTTTCTAAGTAAGGTTATAGGATT
TTGGGGTAACTTTTCAAGAGTAGTATTTATAAACTTGTAATTAGTTGCATGTAGATTTTA
TTTATTTAACATACAGCCTTTCCCACAGTTTCACTAACCTATAACTTATTTAAAATTCTG
ATTTTGTTTGGGTTTCAGTATTTGTCTTTTTTAATGGCTGACATTAACATAAAATCTTTA
CTTTTTGTAAACTTAAGCCATCTGTTTTTATAAAATATTTATCAGTATTAAATAAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGACTGAAAGTTCAAGTGACACTGTGGAAATCTGCAACGAGGGGTTGTCATGAAGGCA
GCTTTTCTTTTTCTGAGGAAAAAATAGGCATGGGCTACAGGACTATTTAAAATGTCTCAT
TTACAGTATAAGCTCAAGGTAGATGTAATTTTTACACCTATGAGTATTTGTCCAGTTTCT
GTCTGTTCCTCTCCATTGGATATCTATTCTTTATATGTAAATAAGATAAGGTAATCAATA
GCCTTATTCAAACGTCATCATTTTCACTCATCAAAGATTGTTCCTATGTAGGTCATTGGA
CATTTATTGTAGCACTACATGACTGATTTAAGAAACAAATCTGTAAATGAATTAGCACTT
TCATATTGAAACAAGCCTGCTAGCCTATGTATAAAATAGCAAAATGTTTGCTCTTTATAA
AAAGATGGGGTGTAATGGGGGGGCAGGGGTAATTTCAAGTTATTAATTTAAAAATGAACT
AGCAATTTTGTACCTGGTGACTTTGTGGTGCACTCACCTCTGATAGTGACTTGAATTTGG
TGTGTTAAAAGGGGTTAGTGATAATTCATTGCTGCTAAAAAATGGCAATTCCCTCTGTGT
CCTTTTTTTCTTAAAGCTCTCAGTGTACAAGTGACTATTTGGATACAAGACCTTGCTGTA
ACAAATAGGAAAGGTGATGTTTGAAGCATGTAAATTGGATATAAAGTTCTACTCTTAAAG
AGTTGATCAAAGAGTATGGCTAAACATCTATATATGCAATCTATTAAAAGAACTTAATTC
GGCTATTATGTCTTGATTTGATTGCAGTTTTTTCCTAATTATATATTTTTTTCTCATTGA
TCTGTTTTTATGCTATATCTACAAAGTGCAAAATGGACACTTAAAAAAAATTGACATTTA
ACACCTGCCTGCCTCCCTTTCCCCATCTTCTCTACCCCTCTTGTGGTATTATCTGGTCCT
AAATGGATAGGCTCGAGGTTCAAGTTTCCCCCCCAAACCACTATTGATACCACTGCAAAA
GCAAGCCAGCAACCAGACAACGTCGAGAGGTTGGCTCGCTCCCCTCTCTCCCAACTGCAT
GTTCAAAAATAAGCCTTTATTAATCGTAAACATCTATCAGATGAGTCTTACATTGGGTTA
TTTTTTTATATACATGTACACACACAATATTCCAAATTGAAAGCAACATCCCAATGGATT
CAGAACTGTTAAGTGCTGTTGTCTATAATGGACTAGAAAATTTATAACTGTAAAAATGAA
GCAAATGCACATATTATTTAAAATTTGCGTAATTAAAACCCATTGGTGTTGTGTTTTCTT
GTATGCCAGTAATTAAGCCGCTGCTCTTGGCTCTGTTTGGTTTCTATTTTAACACTGAAG
GAGTGAGAGTATTTCCTATATTTATGAATTTACTATGAAAATCTTGGCAAAAAAAAGAAA
AAAAAGTCTAAAATGTGTGGGTGAAAACTGTTAATCAAGTGTGTTTCTACTTTTTTCCCC
CCAAGTTGGACACCATCTGTGTACCCTAGGTTGCTTCAGGGGATTTCATTATTATGTAAA
ATCAATAAAGTTAAAATGGAGTAGTTGTATATATGCAACATTGTGTACAGAGGGGAGATA
CTGAATAGTATTAAGCATTTTCGTCTTCCTTTACCTTTGATCCCCTTCTTAATATCCAGT
CTACTTTTTAAAATTTCAGACTTCACTGCTCTTTGAATTGATAATTCCAATTTTCACATT
GTTATTGGAAAACCATATCTAATAAAGGTTTTAGTTATTCCCACGCACAGTATGAAAATT
TCGTTTGCTGAAGTTTTGTTACAAGAGAATGTATTGGCATGTCTTTGAGAACAAGTTATA
TTGTCTCCTCTGTCATACAACTCAAACTAATCTCCATTTATGGATTTTGACTGAAATTAA
AGACCTTAAAATTAATTAAATTATATTTAATATTAAATATTGTTTAAATGGTAGTTTCTA
ATGTATTGAATATATACCTCGATTATTTTCAGTATTTCCTTAAGTATTACATCAAATTAG
AGTTTCTTATAGATATGGATCTTGATATGTGTCGATGTTTCTAAGTAAGGTTATAGGATT
TTGGGGTAACTTTTCAAGAGTAGTATTTATAAACTTGTAATTAGTTGCATGTAGATTTTA
TTTATTTAACATACAGCCTTTCCCACAGTTTCACTAACCTATAACTTATTTAAAATTCTG
ATTTTGTTTGGGTTTCAGTATTTGTCTTTTTTAATGGCTGACATTAACATAAAATCTTTA
CTTTTTGTAAACTTAAGCCATCTGTTTTTATAAAATATTTATCAGTATTAAATAAAGGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               116-233, - strand, RNAz p=0.738626
               

               
               667-786, + strand, RNAz p=0.782317

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-233, - strand, RNAz p=0.738626
               

               
               667-786, + strand, RNAz p=0.782317

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

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               701-772, + strand, RNAmicro p=0.989206

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               701-772, + strand, RNAmicro p=0.989206

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-2339, gnl|bosTau2|chr15 (25770666-25773023)
               

               
               3-2339, gnl|Hg17|chr11 (9423575-9425923)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-2339, gnl|bosTau2|chr15 (25770666-25773023)
               

               
               3-2339, gnl|Hg17|chr11 (9423575-9425923)

Expressed library(ies): 44 entry(ies)

More info

Expressed library(ies): 44 entry(ies)

Help | Less info


               
               tbr (0.770891)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               ste (0.540833)
               

               
               fty (0.527519)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               isp (0.451128)
               

               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 44 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.770891)
               

               
               sme (0.610874)
               

               
               lin (0.582411)
               

               
               ste (0.540833)
               

               
               fty (0.527519)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               jca (0.45584)
               

               
               isp (0.451128)
               

               
               aor (0.390549)
               

               
               sin (0.349895)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	116-233, - strand, RNAz p=0.738626
	667-786, + strand, RNAz p=0.782317

	3-2339, gnl\|bosTau2\|chr15 (25770666-25773023)
	3-2339, gnl\|Hg17\|chr11 (9423575-9425923)

	tbr (0.770891)
	sme (0.610874)
	lin (0.582411)
	ste (0.540833)
	fty (0.527519)
	cbe (0.478469)
	fco (0.471624)
	ece (0.45861)
	jca (0.45584)
	isp (0.451128)
	aor (0.390549)
	sin (0.349895)
	fhi (0.339155)
	mga (0.32041)
	liv (0.292569)
	ldo (0.291008)
	csk (0.281492)
	fce (0.271592)
	ova (0.258264)
	ret (0.257467)
	spc (0.226732)
	nms (0.213858)
	col (0.195008)
	nlu (0.191681)
	sag (0.182715)
	mgm (0.180343)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	ssp (0.13552)
	ute (0.132784)
	kid (0.129735)
	cbr (0.127975)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)